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. Author manuscript; available in PMC: 2019 Feb 19.
Published in final edited form as: Biochem J. 2018 Apr 16;475(7):1323–1334. doi: 10.1042/BCJ20180044

Table 1:

Transcription factors that when depleted increase CFTR mRNA levels ≥ 2 fold in Calu-3 cells.

GENE CFTR/β2M
Change*
Calu-3
FPKM**
HBE
FPKM**
ING2 3.00 7.38 10.10
ANKFY1 2.83 8.01 11.52
NR2F2 2.71 44.65 10.21
BRD8 2.58 37.76 9.47
KLF5 2.58 79.54 122.97
ZNF148 2.52 13.44 6.93
TCF7L2 2.45 22.52 4.15
TGIF1 2.41 47.48 38.61
VGLL1 2.39 80.18 9.71
TLE1 2.36 30.09 10.32
ANKRD54 2.34 16.48 24.21
EHF 2.32 72.53 189.09
SMARCC2 2.31 28.88 17.51
MDM2 2.30 14.84 35.66
BRCA1 2.29 8.00 2.89
ANKZF1 2.29 22.62 23.95
GTF2IRD1 2.28 11.93 24.06
ATF5 2.25 34.38 59.74
ECSIT 2.25 20.23 13.86
SATB2 2.24 1.146 2.69
SREBF2 2.23 131.37 67.47
HDAC1 2.19 206.77 42.60
SMARCE1 2.17 315.31 39.85
BTG1 2.16 52.28 34.37
PLRG1 2.14 36.62 21.04
IRF2BP1 2.13 15.08 7.32
RBAK 2.13 4.05 8.48
CASKIN1 2.13 5.51 5.59
FOXE1 2.11 1.21 5.26
GATAD2A 2.10 40.31 14.27
ZNF232 2.07 3.63 4.23
CDKN2B 2.07 63.80 16.03
TARBP1 2.05 9.47 11.10
TEAD4 2.05 21.13 1.91
NR1D1 2.04 23.90 22.81
ZNF33A 2.02 6.19 5.81
TAF4B 2.00 3.82 1.62
*

Denotes average of duplicate or

**

triplicate assays.

Highlighted factors were studied further.