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. Author manuscript; available in PMC: 2020 Jan 7.
Published in final edited form as: Curr Biol. 2018 Dec 13;29(1):120–127.e5. doi: 10.1016/j.cub.2018.10.065
REAGENT or RESOURCE SOURCE IDENTIFIER
Critical Commercial Assays
1.5 Tesla Siemens Sonata and Avanto scanners, 3 Tesla Siemens Trio and Trio TIM scanners Siemens Medical Systems, Erlangen, Germany N/A
3 Tesla GE MR750 scanner General Electric, USA N/A
Affymetrix 6.0 genotyping array Affymetrix, USA N/A
PsychChip genotyping array Psychiatric Genomics Consortium, USA RRID:SCR_004495
OmniExpress genotyping array Illumina, USA N/A
Omni 2.5 genotyping array Illumina, USA N/A

Deposited Data
Introgressed Neandertal SNPs [18, 20] N/A
GTEx eQTL data gtexportal.org RRID:SCR_013042
BrainSpan Atlas http://www.brainspan.org/static/download.html RRID:SCR_008083

Software and Algorithms
Globularity measurement script (Mathematica) This Study N/A
FreeSurfer (v5.3) http://surfer.nmr.mgh.harvard.edu/ RRID:SCR_001847
FSL FIRST (v5.0, v5.0.9), FLIRT (v6.0) https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/ RRID:SCR_002823
Avizo Thermo Scientific RRID:SCR_014431
Mathematica Wolfram RRID:SCR_014448
SPM12 Wellcome Trust Centre for Neuroimaging, University College London RRID:SCR_007037
CAT12 toolbox Christian Gaser, University of Jena, Germany, http://www.neuro.uni-jena.de N/A
xjview toolbox http://www.alivelearn.net/xjview RRID:SCR_008642
PLINK https://www.cog-genomics.org/plink2/ RRID:SCR_001757
minimac (release 2012–05-29) https://genome.sph.umich.edu/wiki/Minimac RRID:SCR_009292
mach2qtl https://www.unc.edu/~yunmli/software.html RRID:SCR_009621
IMPUTE (v2.2.2) http://mathgen.stats.ox.ac.uk/impute/impute.html RRID:SCR_009245
QUICKTEST (v0.99b) https://wp.unil.ch/sgg/quicktest/ N/A
easyQC https://www.uni-regensburg.de/medizin/epidemiologie-praeventivmedizin/genetische-epidemiologie/software/ N/A
METAL https://genome.sph.umich.edu/wiki/METAL_Documentation RRID:SCR_002013
Genomic Type 1 Error Calculator http://grass.cgs.hku.hk/gec/ N/A
DESeq2 https://bioconductor.org/packages/release/bioc/html/DESeq2.html RRID:SCR_015687