Table 1. Relation between the different cell treatments and the BMP signaling pathway indicated by IPA® software at days 7, 14, 21, and 28. ASCs were treated according to the groups: OM (osteogenic medium); BMP-2 (OM and BMP-2); RA (OM and retinoic acid, RA); BMP-2+RA (OM, BMP-2, and RA). MC3T3-E1 was used as positive control. r<0.05 represents statistically significant difference. Positive z-score indicates up-regulation (highlighted in orange) and negative z-score implies down-regulation (highlighted in blue) of the signaling pathway evidenced by the IPA® software (v=versus).
BMP signaling pathway – Day 7 | BMP signaling pathway – Day 21 | ||||
Observation | Z-score | ρ value | Observation | Z-score | ρ value |
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OM v MC3T3-E1 | 0 | OM v MC3T3-E1 | 0 | ||
BMP-2 v MC3T3-E1 | 0 | BMP-2 v MC3T3-E1 | 0 | ||
RA v MC3T3-E1 | 0 | RA v MC3T3-E1 | 0 | ||
BMP-2+RA v MC3T3-E1 | 0 | BMP-2+RA v MC3T3-E1 | 0 | ||
BMP-2 v OM | 0 | BMP-2 v OM | 1.342 | 5.14E-11 | |
RA v OM | 0 | RA v OM | 0.447 | 5.14E-11 | |
BMP-2+RA v OM | 0 | BMP-2+RA v OM | -1.342 | 5.14E-11 | |
BMP-2 v RA | 1 | 4.51E-09 | BMP-2 v RA | 0.447 | 5.14E-11 |
BMP-2 v BMP-2+RA | -1 | 4.51E-09 | BMP-2 v BMP-2+RA | 1.342 | 5.14E-11 |
RA v BMP-2+RA | -1 | 4.51E-09 | RA v BMP-2+RA | 0.447 | 5.14E-11 |
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BMP signaling pathway – Day 14 | BMP signaling pathway – Day 28 | ||||
Observation | Z-score | ρ value | Observation | Z-score | ρ value |
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OM v MC3T3-E1 | -2 | 4.41E-9 | OM v MC3T3-E1 | 0 | |
BMP-2 v MC3T3-E1 | 0 | BMP-2 v MC3T3-E1 | 0 | ||
RA v MC3T3-E1 | -1 | 4.41E-9 | RA v MC3T3-E1 | 0 | |
BMP-2+RA v MC3T3-E1 | -1 | 8.8E-9 | BMP-2+RA v MC3T3-E1 | 0 | |
BMP-2 v OM | 1 | 5.14E-11 | BMP-2 v OM | 0 | |
RA v OM | 2.236 | 5.14E-11 | RA v OM | 1 | 8.8E-9 |
BMP-2+RA v OM | 1.342 | 4.41E-9 | BMP-2+RA v OM | 2 | 8.8E-9 |
BMP-2 v RA | 1 | 8.8E-9 | BMP-2 v RA | -1 | 8.8E-9 |
BMP-2 v BMP-2+RA | -1 | 8.8E-9 | BMP-2 v BMP-2+RA | -2 | 8.8E-9 |
RA v BMP-2+RA | -0.447 | 5.14E-11 | RA v BMP-2+RA | 0 | |
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DIFFERENTIATION OF BONE-FORMING CELLS at day 14 | |||||
Observation | ρ value | Activation z-score | Molecules | ||
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OM v MC3T3-E1 | 2.20E-06 | -2 | Ca2+,SMAD1,SMAD4,SMAD5 | ||
RA v OM | 1.24E-07 | 2 | Ca2+,SMAD1,SMAD4,SMAD5 | ||
BMP-2+RA v OM | 1.24E-07 | 2 | Ca2+,SMAD1,SMAD4,SMAD5 |