. Author manuscript; available in PMC: 2019 Jun 17.

Published in final edited form as: Nat Methods. 2018 Dec 17;16(1):88–94. doi: 10.1038/s41592-018-0236-3

Table 1. SDA assembly statistics.

		De novo Assembly					Segmental Duplication Assembler (SDA)
Sample	Assembly Accession	Contig N50 (Mbp)	Sequence Coverage	Read N50 (kbp)	Unresolved SDs (Mbp)	Collapses (count / Mbp)	Matched (count / Mbp)	Diverged (count / Mbp)	Multiple Assemblies (count / Mbp)	Failed
CHM1⁹	GCA_001297185.1	26.9	61	20.5	124.1	283 / 52.3	286 / 17.98	304 / 15.51	19 / 1	59
CHM13⁹	GCA_002884485.1	29.3	67	18.2	126.5	527 / 86.6	685 / 39.1	755 / 35.0	69 / 3.1	339
NA19240⁴²	GCA_001524155.4	29.1	61	17.5	124.1	489 / 82.4	789 / 38.8	983 / 40.9	107 / 5.8	257
NA12878²⁷	GCA_900232925.1	7.7	35	12.5	117.7	365 / 52.5	38 / 0.066	792 / 22.1	8 / 0.21	1062

Genome summary statistics for four human genomes sequenced (SMRT/ONT) and assembled (FALCON/Canu) with long-read data.

Collapses from the assemblies were subjected to SDA and the number and Mbp of “matched” and “diverged” contig assemblies to the human reference genome (GRCh38) are shown.