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. 2019 Feb 14;10:113. doi: 10.3389/fimmu.2019.00113

Table 3.

Summary of the external computational programs used by the six programs to predict the protein features instrumental to filter or classify PVCs.

Protein feature Prediction program NERVE Vaxign Jenner-predict VacSol Bowman-Heinson
Subcellular localization Psortb X X X X
TargetP X
Transmembrane domains HMMTOP X X X X
Pathogenic domains or virulent factors SPAAN X X
Pfam X
VFDB X
LipoP X
Similarity to host proteins BLASTp against MHCPEP db X
BLASTp against RefSeq and Swiss Prot db X
OrthoMCL X
B-T cell response NetMhc X
Vaxitope X
ABCPred X
ProPred-I X
ProPred X
GPS-MBA X
PickPocket X
Post-translational modification YinOYang (glycosylation) X
NetPhosK (phosphorylation) X
ProP (proprotein convertase cleavage) X