Table 1. Data Collection and Refinement Statistics (as Reported in the PDB Validation File).
clavulanate (3 min soak) | clavulanate (10 min soak) | sulbactam | tazobactam | avibactam | S70A DTT | S70A | S70C | |
---|---|---|---|---|---|---|---|---|
PDB | 6H2C | 6H2G | 6H2K | 6H2I | 6H2H | 6H2A | 6H28 | 6H27 |
space group | P1 | P1 | P1 | P1 | P1 | P43212 | P1 | P1211 |
a (Å) | 39.65 | 39.40 | 39.71 | 39.63 | 39.52 | 108.9 | 39.59 | 39.60 |
b (Å) | 41.98 | 41.31 | 41.95 | 41.52 | 41.32 | 108.9 | 41.70 | 76.41 |
c (Å) | 76.92 | 76.22 | 76.93 | 76.42 | 76.36 | 60.5 | 76.76 | 79.32 |
α (deg) | 78.41 | 75.67 | 105.10 | 103.83 | 104.83 | 90.00 | 101.31 | 90.00 |
β (deg) | 89.95 | 89.96 | 89.95 | 89.99 | 90.03 | 90.00 | 90.02 | 90.70 |
γ (deg) | 89.75 | 89.26 | 90.81 | 90.79 | 91.18 | 90.00 | 90.05 | 90.00 |
observations | 78782 | 14467 | 139386 | 18477 | 202279 | 714649 | 458598 | 389254 |
unique reflections | 34426 | 9073 | 73926 | 10698 | 51765 | 52631 | 128440 | 58936 |
completeness (%) | 94.4 | 79.2 | 85.9 | 84.3 | 87.0 | 99.6 | 83.8 | 99.8 |
Rpim (%), CC(1/2) highest resolution bin | 0.348, 0.709 | 0.122, 0.881 | 0.066, 0.512 | 0.127, 0.949 | 0.652, 0.578 | 0.679, 0.701 | 0.678, 0.452 | 0.538, 0.762 |
(I/σ(I)) | 4.4 | 5.0 | 8.4 | 9.5 | 5.8 | 1.7 | 7.4 | 9.7 |
multiplicity | 2.3 | 1.6 | 1.9 | 1.7 | 3.91 | 13.6 | 3.6 | 6.6 |
resolution range (Å), highest | 41.12–1.93, 1.98–1.93 | 40.03–2.80, 2.87–2.80 | 40.50–1.90, 1.95–1.90 | 40.32–2.72, 2.79–2.72 | 73.82–1.62, 1.66–1.62 | 49.73–2.54, 2.61–2.54 | 40.89–1.19, 1.22–1.19 | 79.31–1.63, 1.67–1.63 |
R factor (%) | 24.2 | 22.5 | 19.2 | 21.0 | 22.3 | 23.3 | 19.2 | 24.2 |
Rfree (%) | 28.5 | 29.1 | 23.4 | 26.6 | 25.8 | 25.9 | 22.6 | 28.1 |
average B, all atoms (Å2) | 14.0 | 28.0 | 12.0 | 25.0 | 15.0 | 64.0 | 14.0 | 17.0 |
rms Z-Scores | ||||||||
bond lengths | 0.70 | 0.60 | 0.95 | 0.56 | 0.89 | 0.69 | 0.90 | 0.91 |
bond angles | 0.89 | 0.80 | 1.02 | 0.77 | 0.99 | 0.91 | 1.06 | 1.06 |
Number of Atoms | ||||||||
total | 4210 | 4098 | 4490 | 4084 | 4254 | 6046 | 4322 | 4219 |
protein (Ch. A, B, C) | 2013, 2013 | 2030, 2013 | 2040, 1993 | 2025, 2005 | 2028, 2016 | 1995, 2014, 1853 | 2063, 2042 | 2033, 2021 |
ligands | 22 | 10 | 30 | 40 | 51 | |||
DTT | 32 | |||||||
glycerol | 6 | 18 | 24 | 6 | ||||
phosphate | 30 | |||||||
acetate | 19 | 20 | 20 | 8 | ||||
Tris | 22 | |||||||
PEG | 25 | 42 | 21 | 24 | 20 | |||
water | 112 | 25 | 347 | 6 | 138 | 53 | 187 | 145 |
Ramachandran Plot (%) | ||||||||
preferred regions | 98 | 93.8 | 97 | 97 | 98 | 97 | 98 | 98 |
allowed regions | 2 | 6 | 3 | 3 | 2 | 3 | 2 | 2 |
outliers | 0 | 0.2 | 0 | 0 | 0 | 0 | 0 | 0 |