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A summary table comparing the SNPs and loci discovered by BAKR with the findings reported as showing evidence of association in the original WTCCC study. Significance of SNPs was determined using the PPAA metric and a 5% FWER threshold.
| Disease | # Sig. SNPs | # Sig. Regions | # Add. Regions | # Missed Regions |
|---|---|---|---|---|
| BD | 0 | 0 | 0 | 1 |
| CAD | 15 | 1 | 0 | 0 |
| CD | 80 | 8 | 1 | 2 |
| HT | 20 | 1 | 0 | 0 |
| RA | 177 | 4 | 1 | 0 |
| T1D | 440 | 12 | 7 | 1 |
| T2D | 23 | 3 | 2 | 2 |
