Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference |
Identifiers | Additional information |
|---|---|---|---|---|
| Genetic reagent (Mus musculus) | ephrin-B3 knockout (and WT littermates) | Yokoyama et al., 2001, Hruska et al., 2015, Antion et al., 2010. | RRID:MGI:3026744 | |
| Genetic reagent (M. musculus) | MADM-11 TG, eB3+/MADM-11 TG, eB3- (founder line) | This paper. | Progenitor: MADM-11 TG/TG (Hippenmeyer et al., 2010), RRID: IMSR_JAX:013749 | |
| Genetic reagent (M. musculus) | MADM-11 GT/GT; Emx1-Cre | Hippenmeyer et al., 2010, Beattie et al., 2017. | Progenitor: IMSR_JAX:005628 | |
| Genetic reagent (M. musculus) | MADM-11 GT/GT; Nestin-spCre | Hippenmeyer et al., 2010. | ||
| Strain, strain background (Rattus norvegicus domesticus) | Long Evans Rat | Charles River | Strain code: 006: RRID:RGD_2308852 | |
| Aantibody | Rabbit polyclonal anti-GFP | Thermo Fisher Scientific | A6455, RRID:AB_221570 | (1:2500) |
| Aantibody | Mouse monoclonal anti-PSD-95 | NeuroMab (clone 28/43) | Cat. # 75–028, RRID:AB_2292909 | (1:500) |
| Antibody | Guinea pig polyclonal anti-vGlut1 | Millipore | Cat. #AB5905, RRID:AB_2301751 | (1:5000) |
| Antibody | Rabbit polyclonal anti-RFP | Rockland antibodies | Cat. # 600-401-379, RRID:AB_2209751 | (1:500) |
| Antibody | Chicken polyclonal anti-GFP | Abcam | Cat. # ab13970, RRID:AB_300798 | (1:500) |
| Antibody | Rat monoclonal anti-CTIP2 | Abcam | Cat. # ab18465, RRID:AB_10015215 | (1:500) |
| Antibody | Mouse monoclonal anti-SATB2 | Abcam | Cat. # ab51502, RRID:AB_882455 | (1:500) |
| Antibody | Donkey polyclonal anti-rabbit Dylight 488 | Abcam | Cat. # ab96919, RRID:AB_10679362 | (1:500) |
| Antibody | Donkey polyclonal anti-chicken Dylight 488 | Jackson Immunoresearch | Cat. # ab96947, RRID:AB_10681017 | (1:500) |
| Antibody | Donkey polyclonal anti-rabbit Alexafluor 594 | Jackson Immunoresearch | Cat. # 711-585-152, RRID:AB_2340621 | (1:500) |
| Antibody | Donkey polyclonal anti-rat 647 | Jackson Immunoresearch | Cat. # 712-605-153, RRID:AB_2340694 | (1:500) |
| Antibody | Goat polyclonal anti-mouse ATTO 425 | Rockland antibodies | Cat. # 611-151-122, RRID:AB_10893217 | (1:250) |
| Antibody | Donkey polyclonal anti-guinea pig Dylight 649 | Jackson Immunoresearch | Cat. # 706-605-148, RRID:AB_2340476 | (1:500) |
| Recombinant DNA reagent | pFUGW-tdTomato_H1-eB3.2 (plasmid) | Hruska et al., 2015. | Progenitor: pFUGW (RRID:Addgene_14883); pSuper. | |
| Recombinant DNA reagent | pFUGW-tdTomato_H1-pSuper (plasmid) | Hruska et al., 2015. | Progenitor: pFUGW (RRID:Addgene_14883), pSuper. | |
| Recombinant DNA reagent | pSuper (plasmid) | Hruska et al., 2015, McClelland et al., 2010. | ||
| Recombinant DNA reagent | eB3.2 shRNA (plasmid) | Hruska et al., 2015, McClelland et al., 2010. | pSuper | |
| Recombinant DNA reagent | pFUGW (plasmid) | Hruska et al., 2015, McClelland et al., 2010. | RRID:Addgene_14883 | |
| Recombinant DNA reagent | pLL3.7 (plasmid) | Addgene | RRID:Addgene_11795 | |
| Recombinant DNA reagent | ephrin-B3 shRNA lentivirus | Penn Vector Core (University of Pennsylvania) | Progenitor: pLL3.7 vector (RRID:Addgene_11795) | |
| Peptide, recombinant protein | Recombinant human EphB2 Fc chimera | R and D systems | Cat. # 5189-B2 | |
| Peptide, recombinant protein | Recombinant Fc control fragment | R and D systems | 110-HG-100 | |
| Commercial assay or kit | RNAscope fluorescent multiplex kit | Advanced Cell Diagnostics | 320850 | |
| Commercial assay or kit | RNAscope probe- Mm-Bcl11b (CTIP2) | Advanced Cell Diagnostics | Cat. # 413271-C3 | |
| Commercial assay or kit | RNAscope probe- Mm-Satb2-C2 | Advanced Cell Diagnostics | Cat. # 413261-C2 | |
| Commercial assay or kit | RNAscope probe- Mm-Efnb3 | Advanced Cell Diagnostics | Cat. # 526771 | |
| Chemical compound, drug | Tetrodotoxin (TTX) | Tocris | Cat. #1078 | |
| Software, algorithm | NIH ImageJ | McClelland et al., 2009, Hruska et al., 2015. | RRID:SCR_003070 |