TABLE 3.
Composition and differential expression of the BMC locus in C. beijerinckii DSM 6423
| C. beijerinckii protein | Proposed protein function | Closest homologue with experimental evidencea
|
Log2 fold change in expression relative to d-glucose cultures |
|||
|---|---|---|---|---|---|---|
| Organism | Protein (% similarity) | 3 h | 6.5 h | 10 h | ||
| CIBE_4883 | Propanediol oxidoreductase | S. Typhimurium | PduS (68) | 5.79 | 5.42 | 3.83 |
| CIBE_4884 | Propionaldehyde dehydrogenase | C. phytofermentans | Cphy_1178 (70) | 9.49 | 8.32 | 6.24 |
| CIBE_4885 | EutJ, putative chaperonin, ethanolamine utilization protein | S. Typhimurium | EutJ (63) | 8.62 | 7.61 | 6.57 |
| CIBE_4886 | Phosphate propanoyl transferase | C. phytofermentans | Cphy_1183 (67) | 9.11 | 7.87 | 6.06 |
| CIBE_4887 | BMC-H shell protein | C. phytofermentans | Cphy_1182 (88) | 8.73 | 7.91 | 5.63 |
| CIBE_4888 | Conserved membrane protein of unknown function | 8.75 | 7.81 | 5.87 | ||
| CIBE_4889 | MetK, S-adenosylmethionine synthetase | 9.12 | 8.08 | 6.58 | ||
| CIBE_4890 | Response regulator receiver protein | 9.16 | 8.34 | 7.15 | ||
| CIBE_4891 | Signal transduction histidine kinase, LytS | 9.42 | 8.49 | 6.93 | ||
| CIBE_4892 | Propanol dehydrogenase | Klebsiella pneumoniae | Dhat (43) | 9.99 | 10 | 7.57 |
| CIBE_4893 | Propionaldehyde dehydrogenase | C. phytofermentans | Cphy_1178 (63) | 9.54 | 9.56 | 7.27 |
| CIBE_4894 | BMC-P shell protein | C. phytofermentans | Cphy_1184 (71) | 9.47 | 9.43 | 7.45 |
| CIBE_4895 | BMC-H shell protein | C. phytofermentans | Cphy_1186 (61) | 10 | 10 | 7.8 |
| CIBE_4896 | Conserved protein of unknown function | 11 | 10 | 8.15 | ||
| CIBE_4897 | BMC-H shell protein | C. phytofermentans | Cphy_1182 (89) | 11 | 10 | 7.54 |
| CIBE_4898 | BMC-T shell protein | S. Typhimurium | PduB (67) | 10 | 8.99 | 7.04 |
| CIBE_4899 | Propanediol dehydratase activator | Clostridium butyricum | DhaB2 (56) | 11 | 11 | 7.69 |
| CIBE_4900 | Propanediol dehydratase | C. butyricum | DhaB1 (58) | 12 | 10 | 6.94 |
| CIBE_4901 | Glutamine amidotransferase | 6.3 | 5.94 | 5.44 | ||
| CIBE_4902 | Propanediol utilization protein | S. Typhimurium | PduV (62) | 6.56 | 6.31 | 5.62 |
| CIBE_4903 | BMC-H shell protein | C. phytofermentans | Cphy_1176 (76) | 7.67 | 6.72 | 5.73 |
| CIBE_4904 | Propanediol utilization protein | S. Typhimurium | PduO (62) | 7.11 | 6.14 | 5.01 |
| CIBE _4905 | Hypothetical protein | 2.15 | ND | ND | ||
| CIBE _4906 | Xanthine/uracil/vitamin C permease | −2.26 | −3.31 | 1.65 | ||
a
All percent similarity values were determined using global alignments of protein sequences using the gapped BLAST algorithm (19). References for the characterized functional equivalents are as follows: Salmonella Typhimurium, 11; C. phytofermentans, 12; Klebsiella pneumoniae, 37; C. butyricum, 38; for the BMC shell protein types, 39.