Table 4.
Gene annotations of DArTseq and SNP markers associated with energy trapping efficiency in PSII (Fv/Fm) in barley plants under drought.
| Marker | Chromosome location | Number of genotypes and subpopulation affinity | UniProt | GO annotations | CD |
|---|---|---|---|---|---|
| 3432879 | morex_contig_2552250|7|29.82|36768480 | 21: 5(1), 0(1/2), 2(2), 14(3) | A0A287VP74 Uncharacterized protein (Hordeum vulgare subsp. vulgare), 100%, A0A1D6BXJ6 3-ketoacyl-CoA synthase (Triticum aestivum), 100% | Biological Process: GO:0006633 fatty acid biosynthetic process, GO:0008152 metabolic process Molecular Function: GO:0003824 catalytic activity, GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups Cellular Component: GO:0016020 membrane | cl09938 cond_enzymes super family |
| 3661735 | morex_contig_1559786|6|108.29|524059960 | 14: 12(1), 2(1/2), 0(2), 0(3) | A0A287V3B9 Predicted protein (Hordeum vulgare subsp. vulgare), 100% | Biological Process: -Molecular Function: GO:0005515 protein binding Cellular component: - | - |
| 3986939 | - | 26: 20(1), 2(1/2), 4(2), 0(3) | A0A1D5YYY1 Uncharacterized protein (Triticum aestivum), 100% | Biological Process: -Molecular Function: GO:0005515 protein binding Cellular component: - | - |
| 100002035* | bowman_contig_81449|5|111.32|483596280 | 14: 10(1), 2(1/2), 2(2), 0(3) | A0A287S550 Uncharacterized protein (Hordeum vulgare subsp. vulgare), 92.3% | Biological Process: GO:0006468 protein phosphorylation, GO:0048544 recognition of pollen Molecular Function: GO:0004672 protein kinase activity, GO:0005524 ATP binding Cellular component: - | - |
| 3266819* | barke_contig_1800369|5|109.65|481385360 | 14: 10(1), 2(1/2), 2(2), 0(3) | A0A1D5Z2I8 Uncharacterized protein (Triticum aestivum), 95.5% | Biological Process: -Molecular Function: GO:0005515 protein binding Cellular component: - | - |
| 3397479* | bowman_contig_64191|5|110.93|481616000 | 14: 10(1), 2(1/2), 2(2), 0(3) | A0A287E1P0 Uncharacterized protein (Hordeum vulgare subsp. vulgare), 100% | Biological Process: GO:0006468 protein phosphorylation, GO:0048544 recognition of pollen Molecular Function: GO:0004672 protein kinase activity, GO:0005524 ATP binding Cellular component: - | - |
| 4172735* | bowman_contig_64191|5|110.93|481616000 | 14: 10(1), 2(1/2), 2(2), 0(3) | A0A287E1P0 Uncharacterized protein (Hordeum vulgare subsp. vulgare), 100% | Biological Process: GO:0006468 protein phosphorylation, GO:0048544 recognition of pollen Molecular Function: GO:0004672 protein kinase activity, GO:0005524 ATP binding Cellular component: - | cl00112 PAN_APPLE super family |
| 5249526* | bowman_contig_81449|5|111.32|483596280 | 80: 18(1), 13(1/2), 29(2), 20(3) | A0A287S550 Uncharacterized protein (Hordeum vulgare subsp. vulgare), 100% M8C7I9 Putative serine/threonine-protein kinase receptor (Aegilops tauschii), 81% | Biological Process: GO:0006468 protein phosphorylation, GO:0048544 recognition of pollen Molecular Function: GO:0004672 protein kinase activity, GO:0005524 ATP binding Cellular component: - | - |
SNPs are asterisked. Exact chromosome location of the marker with gene annotation, ‘-‘unknown, number of genotypes carrying allele “1” or “1” and “2” (SNP markers) and their subpopulation affinity (by STRUCTURE), regions of local similarity of marker sequence described by UniProt (protein ID, species, percentage of similarity [%]), Gene Ontology (GO) assigned by InterPro database, CD—conserved domain identified by NCBI Conserved Domain Database (CDD). ‘-' non-predicted. Only markers with UniProt annotations are presented. For the whole dataset see Supplementary Table S6.