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. 2018 Dec 12;9(2):473–489. doi: 10.1534/g3.118.200835

Table 2. Influential genomic regions for TYM. Ten regions with the largest total effects, and that contain more than 30 markers, are listed in descending order of absolute total effect. The regional information comprises the linkage group (LG), the total effect, the contributing parent and the number of markers. Note that the impact of the region on the phenotype is obtained by multiplying the total effect by the marker scores (1 for Cranbrook and -1 for Halberd). The name and distance correspond to the marker with the maximum absolute effect within the region. The final two columns are the p-value and LOD score for the markers that remained after the backward elimination step (that commenced with all ten markers listed in the Table).

LG Total effect Contribution No. Markers Marker Distance (cM) p-value LOD
5A 8.555 Cranbrook 63 VRN-A1 144 <0.0001 73.66
2A −1.941 Halberd 50 IWB72377 59 0.0062 1.63
6B −1.292 Halberd 39 IWB42940 157 0.0035 1.85
7B −0.988 Halberd 31 IWB2239 150
1A −0.965 Halberd 33 IWA3378 167 0.0109 1.41
4B 0.843 Cranbrook 39 IWA27 104 0.0003 2.85
4A −0.690 Halberd 36 IWB31311 44 0.0505 0.83
2B −0.631 Halberd 35 IWB28651 185 0.0193 1.19
1A −0.631 Halberd 39 IWB28415 64
5B 0.629 Cranbrook 47 IWB36364 141