Table 1.

Functional genomic similarity under different subsets of F_ST based and randomly selected SNPs for the scenario when LD^a between adjacent markers was equal to 0.7. Standard errors of Functional genomic similarity are listed between parentheses

	Genomic similarity
SNPs	FST based	Random
2.5 K	0.7013 (0.0020)	0.6695 (0.0003)
5 K	0.6862 (0.0020)	0.6687 (0.0003)
10 K	0.6752 (0.0010)	0.6682 (0.0002)
20 K	0.6718 (0.0006)	0.6678 (0.0001)
40K	0.6712 (0.0005)	0.6675 (0.0001)
80 K	0.6708 (0.0004)	0.6673 (0.0001)
160 K	0.6705 (0.0003)	0.6672 (0.0001)
400 K	0.6671 (0.0003)	0.6671 (0.0001)

^aLD linkage disequilibrium