. 2019 Feb 22;50:15. doi: 10.1186/s13567-019-0633-3

Table 3.

Differentially abundant genera in the caecal or ileal microbiota

Phylum	Class	Order	Family	Genus	Mean relative abundance		Log₂ fold change	Adjusted p-value
Phylum	Class	Order	Family	Genus	Control	Resin acids	Log₂ fold change	Adjusted p-value
Ileum
Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Bifidobacterium	0.028%	0.000%	−5.96	7.26E−14
Actinobacteria	Actinobacteria	Micrococcales	Brevibacteriaceae	Brevibacterium	0.067%	0.011%	−3.29	8.14E−06
Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium 1	2.898%	1.797%	−1.55	2.81E−02
Firmicutes	Bacilli	Bacillales	Planococcaceae	Kurthia	0.167%	0.000%	−8.81	5.59E−28
Firmicutes	Bacilli	Lactobacillales	Carnobacteriaceae	Trichococcus	0.114%	0.013%	−3.46	1.36E−07
Firmicutes	Bacilli	Lactobacillales	Carnobacteriaceae	Jeotgalibaca	0.048%	0.062%	−1.86	8.30E−03
Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Pediococcus	0.006%	0.027%	1.84	2.40E−02
Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae	Ambiguous_taxa	0.095%	0.001%	−5.58	2.07E−04
Firmicutes	Clostridia	Clostridiales	Clostridiaceae 1	Candidatus Arthromitus	0.734%	0.318%	−1.99	1.62E−02
Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae	uncultured	0.003%	0.027%	2.99	7.91E−05
Firmicutes	Erysipelotrichia	Erysipelotrichales	Erysipelotrichaceae	Turicibacter	0.014%	0.002%	−3.12	4.92E−05
Firmicutes	Erysipelotrichia	Erysipelotrichales	Erysipelotrichaceae	Erysipelatoclostridium	0.005%	0.020%	1.65	1.50E−02
Caecum
Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Bifidobacterium	3.369%	0.004%	−8.90	2.62E−27
Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	2.484%	4.904%	1.51	3.75E−02
Firmicutes	Clostridia	Clostridiales	Ruminococcaceae	uncultured	2.935%	5.833%	1.42	1.63E−02
Firmicutes	Clostridia	Clostridiales	Ruminococcaceae	DTU089	0.727%	1.257%	1.93	1.63E−02
Firmicutes	Clostridia	Clostridiales	Lachnospiraceae	Tyzzerella	0.129%	0.608%	2.76	2.63E−02
Firmicutes	Clostridia	Clostridiales	Lachnospiraceae	Lachnoclostridium 5	0.011%	0.083%	3.64	1.63E−02
Firmicutes	Clostridia	Clostridiales	Ruminococcaceae	Ruminococcaceae UCG−004	0.000%	0.040%	7.21	1.67E−03

Significant differences in genus level abundance in the caecal or ileal microbiota from birds fed the resin acid-supplemented diet as compared to the control diet. The taxonomic classification, the mean relative abundance and the log₂ fold change (resin acids/control) of the DESeq2 normalized abundance of each genus are shown.