Table 1. Genome Features of cCpun draft genome and its closest relatives.
cCpun | cEper1** | cBtQ1** | cSfur | cHgTN10 | cPpe | A. asiaticus | |
---|---|---|---|---|---|---|---|
Number of scaffolds | 57* | 1 | 11 | 1 | 1 | 27 | 1 |
Plasmids | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
Total size in kb | 1,137 | 887 (58) | 1,013 (52) | 1,103 | 1,193 | 1,358 | 1,884 |
GC content (%) | 33.7 | 36.6 (31.5) | 35 (32) | 39.2 | 38.2 | 35.8 | 35 |
CDS | 917 | 841 (65) | 709 (30) | 795 | 974 | 1,131 | 1,557 |
Avg. CDS length (bp) | 993 | 911 (733) | 1,033 (1,389) | 1,052 | 997 | 941 | 990 |
Coding density (%) | 80 | 85.5 (82.1) | 79.7 (80.1) | 75.7 | 81.4 | 78.3 | 81.8 |
rRNAs | 3 | 3 | 3 | 3 | 3 | 3 | 3 |
tRNAs | 37 | 37 | 35 | 35 | 37 | 34 | 35 |
Ankyrin repeat proteins | 46 | 18-19 | 26 | 29 | 27 | 32 | 54 |
Reference | this study | a | b | c | d | e | f |
Notes:
contigs > 500 bp.
chromosome (plasmid).