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. Author manuscript; available in PMC: 2020 Feb 15.
Published in final edited form as: Methods. 2018 Nov 27;155:131–139. doi: 10.1016/j.ymeth.2018.11.015

Figure 3. Shirloc bioinformatic analysis pipeline.

Figure 3.

Shirloc utilizes Kallisto and Sleuth to determine transcript abundance and calculate fold change of fractions relative to the monosome. A ribosomal occupancy factor is then applied to calculate Ribosomal Occupancy Shift (ROS) values. The final output is given in table form. The data can then be visualized in many different ways, including the examples provided.