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. 2019 Feb 25;9:2695. doi: 10.1038/s41598-019-39633-0

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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UCSC Genome browser view of the 26 AS-SNPs (green dots) in high LD with the GWAS SNP rs9272346 (yellow pin) associated to Type 1 Diabetes. Histone modifications tracks for H3K4me1, H3K4me3 and H3K27ac were retrieved from the ENCODE project for the B cell line GM12878 (scaled using vertical viewing range settings) as well as the RepeatMasker track which reports DNA sequences with interspread repeats (e.g. SINE, LINE, etc.) and low complexity DNA sequences. On the bottom track, transcription factors binding sites from ChIP-seq data from the ENCODE project for GM12878 (G) and other B cell lines (g). The insert on the top zooms into the first intron of HLA-DQA1.