Table 3. Whole-genome sequencing of selected respiratory and household Mycobacterium avium isolates with matched genotypes by VNTR, Philadelphia, Pennsylvania, USA, 2010–2012*.
| Case no. |
Source |
Genotype |
SNV distance between respiratory and household isolates |
|---|---|---|---|
| P4 | Kitchen sink | 14a - I | 51 |
| P8 | Shower pipe | 14a - I | 8 |
| P10 | Shower pipe | 22 | 4 |
| P13 | Kitchen sink | 14a - I | 37 |
| P14 | Shower pipe | 14a - I | 8 |
| P24 | Refrigerator tap | 14a - II | 12 |
| P24 | Central humidifier | 14a - II | 14 |
| P33 | Kitchen sink | 14a - I | 24 |
| P34 | Bathroom sink | 14a - I | 8 |
| P34 | Kitchen sink | 14a - I | 11 |
| P34 | Shower pipe | 14a - I | 16 |
*SNV, single-nucleotide variant; VNTR, variable-number tandem-repeat.