Table 2. GO annotation categories enriched in nuclear size mutants.
GO category | Nuclear size mutants | Background | Fold enrichment | p value | |||
---|---|---|---|---|---|---|---|
Frequency | % | Frequency | % | ||||
GOBP | mRNA processing | 8/33 | 24.2 | 96/3377 | 2.8 | 8.6 | 0.00057 |
mRNA metabolic process | 10/33 | 30.3 | 160/3377 | 4.7 | 6.5 | 0.00036 | |
RNA processing | 12/33 | 36.4 | 258/3377 | 7.6 | 4.8 | 0.00059 | |
gene expression | 20/33 | 60.6 | 849/3377 | 25.1 | 2.4 | 0.00355 | |
GOCC | LINC complex | 2/33 | 6.1 | 2/3377 | 0.1 | 61 | 0.00787 |
Nem1-Spo7 phosphatase complex | 2/33 | 6.1 | 2/3377 | 0.1 | 61 | 0.00787 | |
intracellular ribonucleoprotein complex | 10/33 | 30.3 | 260/3377 | 7.7 | 3.9 | 0.00988 | |
ribonucleoprotein complex | 10/33 | 30.3 | 260/3377 | 7.7 | 3.9 | 0.00988 | |
nuclear part | 20/33 | 60.6 | 779/3377 | 23.1 | 2.6 | 0.00031 | |
protein complex | 16/33 | 48.5 | 627/3377 | 18.6 | 2.6 | 0.00705 | |
macromolecular complex | 27/33 | 81.8 | 1082/3377 | 32.0 | 2.6 | 3.87 x10-7 |
GO annotation categories enriched in genes deleted in 33 nuclear size mutants relative to background population of all essential and non-essential genes screened (p ≤ 0.01) are shown. Adjusted p values calculated using the Bonferroni multiple hypothesis testing correction method. GO biological process (GOBP) and GO cellular component (GOCC) are shown. No GO molecular function (GOMF) categories were significantly enriched. Enrichment analysis performed using GO::TermFinder [23] with PomBase annotations [24].