Table 4.
The VFs predicted in three clinically pathogenic and three environmental M. odoratimimus genomes
| Classification | Definition | Genes coding for virulence factors | |||||
|---|---|---|---|---|---|---|---|
| Clinically pathogenic M. odoratimimus | Environmental M. odoratimimus | ||||||
| CCUG. 12901 | CCUG. 10230 | CIP. 101113 | H1bi | L41 | CCUG. 12700 | ||
| Capsular polysaccharide | UDP‐N‐acetyl‐D‐galactosamine 6‐dehydrogenase | capL (hasB2) | capL | ‐ | capL | ‐ | capL |
| UDP‐glucose 4‐epimerase | galE | galE | galE | galE | galE | galE | |
| Bifunctional UDP‐N‐acetylglucosamine pyrophosphorylase/glucosamine‐1‐phosphate N‐acetyltransferase | glmU | glmU | glmU | glmU | glmU | ‐ | |
| UDP‐glucose 6‐dehydrogenase | ugd | ugd | ugd | ‐ | ugd | ‐ | |
| Capsule sialic acid | UDP‐N‐acetylglucosamine 2‐epimerase | wbjD/wecB | wbjD/wecB | wbjD/wecB | wbjD/wecB | ‐ | wbjD/wecB |
| Cell wall Peptidoglycan | Undecaprenyl diphosphate synthase | uppS | uppS | uppS | uppS | uppS | uppS |
| Glucose‐1‐phosphate thymidylytransferase | rmlA | rmlA | rmlA | rmlA | rmlA | rmlA | |
| dTDP‐glucose 4,6‐dehydratase | rmlB | rmlB | rmlB | rmlB | ‐ | ‐ | |
| UDP‐N‐acetyl‐D‐mannosaminuronic acid dehydrogenase | wecC | wecC | wecC | ‐ | ‐ | wecC | |
| Intracellular survival factors | Catalase katA | katA | katA | katA | katA | katA | katA |
| ATP‐dependent Clp protease proteolytic subunit | clpP | clpP | clpP | clpP | clpP | clpP | |
| Elongation factor Tu | EF‐Tu | EF‐Tu | EF‐Tu | EF‐Tu | EF‐Tu | EF‐Tu | |
| Superoxide dismutase | sodB | SodB | sodB | sodB | sodB | sodB | |
| Molecular chaperones | CT396 molecular chaperone DnaK | DnaK | DnaK | DnaK | DnaK | DnaK | DnaK |
| 60k heat‐shock protein HtpB | Hsp60 | Hsp60 | Hsp60 | Hsp60 | Hsp60 | Hsp60 | |
| Urease | Urease | ureA | ureA | ureA | ureA | ureA | ureA |
| Urease | ureB | ureB | ureB | ureB | ureB | ureB | |
| Urease/hydrogenase‐associated predicted GTPase | ureG | ureG | ureG | ureG | ureG | ureG | |
| Acinetobactin | ABC‐type enterochelin transport system, ATPase component | bauE | bauE | bauE | bauE | ‐ | bauE |
| Streptococcal enolase | Streptococcal enolase | eno | eno | eno | eno | eno | eno |
| Pantothenate synthesis | Aspartate 1‐decarboxylase | panD | panD | panD | panD | panD | panD |
| Heme biosynthesis | Porphobilinogen synthase | hemB | hemB | hemB | hemB | hemB | hemB |
| glutamate‐1‐semialdehyde aminotransferase | hemL | hemL | hemL | hemL | hemL | hemL | |
| Acyl carrier protein | acpXL | acpXL | acpXL | acpXL | acpXL | acpXL | |
| T4SS effectors | Trans‐2‐enoyl‐CoA reductase (no unique name) | + | + | + | + | + | + |
‐not predicted; +,predicted; bold/italic, were discussed.