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. 2019 Feb 27;14(2):e0213023. doi: 10.1371/journal.pone.0213023

Table 1. Characterization of nucleotide variability of analyzed plastid regions (cpDNA) in the type of Secale.

Nucleotide variability aRegions of cpDNA Total Mean
1 2 3 4
Length [bp] 815 600 653 963 3031 758
No. of Conserved sites [C] 671 248 490 889 3054 575
No. of Variable sites [V] 114 336 159 68 677 271
No. of Parsim-info [Pi] 7 31 59 42 139 81
No. of InDel site 17 16 19 29 81 32.40
Max. InDel size 14 1 2 1 - 2,61
No. of Substitutions sites 106 142 118 40 406 102
No. of Haplotype 8 12 5 16 41 8.40
Haplotype diversity [Hd] 0.408 0.565 0.341 0.765 - 0.520
Nucleotides diversity [Pi] 0.011 0.034 0.010 0.006 - 0.015

aAnalyzed plastid regions (cpDNA): 1-atpB-rbcL intergenic spacer; 2trnT(UGU)-trnL(UAA)5’exon intergenic spacer; 3- trnL(UAA) intron intergenic spacer; 4- trnD[tRNA-Asp(GUC)]-trnT[tRNA-Thr(GGU)] intergenic spacer.