Table 1. Characterization of nucleotide variability of analyzed plastid regions (cpDNA) in the type of Secale.
Nucleotide variability | aRegions of cpDNA | Total | Mean | |||
---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | |||
Length [bp] | 815 | 600 | 653 | 963 | 3031 | 758 |
No. of Conserved sites [C] | 671 | 248 | 490 | 889 | 3054 | 575 |
No. of Variable sites [V] | 114 | 336 | 159 | 68 | 677 | 271 |
No. of Parsim-info [Pi] | 7 | 31 | 59 | 42 | 139 | 81 |
No. of InDel site | 17 | 16 | 19 | 29 | 81 | 32.40 |
Max. InDel size | 14 | 1 | 2 | 1 | - | 2,61 |
No. of Substitutions sites | 106 | 142 | 118 | 40 | 406 | 102 |
No. of Haplotype | 8 | 12 | 5 | 16 | 41 | 8.40 |
Haplotype diversity [Hd] | 0.408 | 0.565 | 0.341 | 0.765 | - | 0.520 |
Nucleotides diversity [Pi] | 0.011 | 0.034 | 0.010 | 0.006 | - | 0.015 |
aAnalyzed plastid regions (cpDNA): 1-atpB-rbcL intergenic spacer; 2—trnT(UGU)-trnL(UAA)5’exon intergenic spacer; 3- trnL(UAA) intron intergenic spacer; 4- trnD[tRNA-Asp(GUC)]-trnT[tRNA-Thr(GGU)] intergenic spacer.