Table 1:
Reported are the number of reads (after adapter trimming) used as input for the mapping software (STAR), number of reads that uniquely mapped to the reference genome, and the percent of reads that mapped to the reference genome. “Liquid N2” stands for liquid nitrogen.
Sample Name | Treatment | Input reads | Uniquely mapped reads | % Mapped |
---|---|---|---|---|
CHOY-16-01 | Liquid N2 | 20,162,412 | 18,125,738 | 89.90% |
CHOY-16-04 | Liquid N2 | 15,760,631 | 13,812,190 | 87.64% |
CHOY-16-05 | Liquid N2 | 18,025,208 | 16,015,383 | 88.85% |
CHOY-16-08 | Liquid N2 | 16,368,007 | 14,584,314 | 89.10% |
CHOY-16-11 | Liquid N2 | 17,997,036 | 15,126,300 | 89.61% |
CHOY-16-12 | Liquid N2 | 20,561,206 | 18,221,558 | 88.62% |
CHOY-16-R-01 | RNAlater | 17,984,846 | 15,643,479 | 86.98% |
CHOY-16-R-03 | RNAlater | 17,064,911 | 14,913,653 | 87.39% |
CHOY-16-R-04 | RNAlater | 13,585,649 | 11,809,525 | 86.93% |
CHOY-16-R-05 | RNAlater | 15,692,250 | 13,716,160 | 87.41% |
CHOY-16-R-2 | RNAlater | 18,120,799 | 15,851,038 | 87.47% |