Table 1.
Characteristics of Plasmodium falciparum CNVs used in this study
| Clone | Data source | CNV Chr. | CNV start (bp w/ 95% confidence interval) | CNV end (bp w/ 95% confidence interval) | # of supporting genomes |
|---|---|---|---|---|---|
| DSM1C | Guler et al., (8) | 6 | 79 067 ± 0 | 152 482 ± 0 | 1 |
| DSM1D | 6 | 64 578 ± 0 | 158 152 ± 0 | 1 | |
| DSM1E | 6 | 118 425a | 153 231a | 1 | |
| DSM1F | 6 | 113 523a | 152 482a | 1 | |
| HFGRII | Herman et al., (42) | 12 | 587 623 ± 61 | 612 922 ± 3 | 1 |
| HFGRIII | 12 | 589 189 ± 5 | 621 909 ± 1 | 1 | |
| CladoA | Manary et al., (60) | 13 | 2 000 221 ± 11 | 2 058 842 ± 1 | 1 |
| CladoB | 13 | 2 004 915 ± 2 | 2 055 159 ± 1 | 1 | |
| CladoC | 13 | 2 000 213 ± 4 | 2 022 803 ± 0 | 1 | |
| PQA11 | Cowell et al., (43) | 10 | 290 655 ± 0 | 308 771 ± 2 | 1 |
| F7 | 1 | 264 317 ± 0 | 359 349 ± 0 | 6 | |
| 3B6 | 1 | 264 317 ± 1 | 362 912 ± 0 | 1 | |
| 1F4 | 1 | 321 511 ± 5 | 373 058 ± 9 | 2 | |
| 2G9 | 1 | 321 511 ± 2 | 362 912 ± 10 | 2 | |
| 1E3 | 1 | 321 511 ± 2 | 362 913 ± 9 | 2 | |
| 33XC3 | 12 | 1 733 591 ± 3 | 1 768 713 ± 3 | 1 | |
| 3C3 | 12 | 1 718 154 ± 3 | 1 769 038 ± 3 | 6 | |
| R2B2 | 3 | 782 909 ± 45 | 845 526 ± 0 | 4 | |
| 1B2 ch10 | 10 | 285 731 ± 27 | 315 681 ± 3 | 1 | |
| 1B2 ch12 | 12 | 1 549 855 ± 5 | 1 567 426 ± 1 | 1 |
aWhole genome sequencing is not available for these two clones. Analysis was performed using locations identified by PCR sequencing.