Table 1.

Table of oligonucleotides used in this study.

Name	5′ modification	Sequences (5′ to 3′ direction)
NDV.A1_PLP	Phosphate	CAATWCCCCCTCTCGCAGTGTATGCAGCTCCTCAGTAATAGTGTCTTACGACGCAACTTCACCGAATGATTCTGGCAAAGCCCCT
NDV.A2_PLP	Phosphate	YCTGATAGTCTCTCTGTCTTGTGTATGCAGCTCCTCAGTAATAGTGTCTTACGACGCAACTTCACCGAATGATAGATGAAGAAAGTATCTGA
NDV.A3_PLP	Phosphate	ATGGAGACACTCGATATAGTGTATGCAGCTCCTCAGTAATAGTGTCTTACGACGCAACTTCACCGAATGAAGTCATTTGATATATGGACAT
NDV.B1_PLP	Phosphate	TGACCCCATTTCCCTGGTGTATGCAGCTCCTCAGTAATAGTGTCTTACGACGCAACTTCACCGAATGAAAGGATATGCTATCYTGAA
NDV.B2_PLP	Phosphate	RTTAAGACAATACTTTTGCAGTGTATGCAGCTCCTCAGTAATAGTGTCTTACGACGCAACTTCACCGAATGATTGACTGTCTGATATCTCCA
NDV.B3_PLP	Phosphate	ATTACAGTGTTTTCACGTGTATGCAGCTCCTCAGTAATAGTGTCTTACGACGCAACTTCACCGAATGAGATGCAATGTTGGCACARGAC
NDV.B4_PLP	Phosphate	TTCTRTTCCGGGCATAATCTGTGTATGCAGCTCCTCAGTAATAGTGTCTTACGACGCAACTTCACCGAATGACCTGTCAAAGGTGACCAGC
NDV.B5_PLP	Phosphate	RGATATGTGAATGTAAGGTGGTGTATGCAGCTCCTCAGTAATAGTGTCTTACGACGCAACTTCACCGAATGAAATAGCCTTTGRGAATCATT
NDV.B6_PLP	Phosphate	TTTTTGTTGAGCACGAGTCAGTGTATGCAGCTCCTCAGTAATAGTGTCTTACGACGCAACTTCACCGAATGACCTATGGTTTTCATRTASAA
NDV.A1 primer	Biotin	GTCCCGAATGACGACATATA
NDV.A2 primer	Biotin	CATGTCAATCATCTGATAGG
NDV.A3 primer	Biotin	ACTGCAGGGAATCTCCAACA
NDV.B1 primer	Biotin	AAGAGTATGYTRGCRATGAG
NDV.B2 primer	Biotin	AAGAGTATGYTRGCRATGAG
NDV.B3 primer	Biotin	GTCCTYAAAAAYTCATCTAA
NDV.B4 primer	Biotin	TYGCRCATGCYATCATGG
NDV.B5 primer	Biotin	YACRGCTGGGAATCTYCAACA
NDV.B6 primer	Biotin	TVGGDATTACYAAACTCAAAGA
Restriction oligo		GTGTATGCAGCTCCTCAGTA
Detection oligo	Cy3	TTTTTGTAAGACACTATTACTGAGG
Detection oligo*	Cy3	TTTTTTCATTCGGTGAAGTTGCGTC
Detection oligo*	Cy5	TTTTTTATCTCAGCACACGGGACAG
Detection oligo*	Alexa750N	TTTTTACAGGCAGGCAATCGTTGTA

W: A or T Y: C or T R: A or G S: C or G V: A or C or G D: A or G or T.

*Detection oligonucleotides used in multiplexing assay.