Antibodies |
Rabbit anti-pSMAD5 |
Abeam |
Cat# ab92698; RRID: AB_10561456 |
Mouse anti-active beta-catenin |
Millipore |
Cat# 05–665; RRID: AB_309887 |
Guinea pig anti-Insulin |
MP biomedicals |
Cat# 651041 |
Mouse Pan Cytokeratin (AE1/AE3) eFluor 660 |
Thermo Fisher Scientific |
Cat# 50–9003–82; RRID: AB_2574301 |
Donkey anti-mouse Fab Alexa488 |
Jackson Immuno Research |
Cat# 715–547–003; RRID: AB_2340851 |
Donkey anti-rabbit Alexa488 |
Jackson Immuno Research |
Cat# 711 −547–003; RRID: AB_2340620 |
Donkey anti-Guinea pig F(ab”)2 Rhodamine Red X |
Jackson Immuno Research |
Cat# 706–296–148; RRID: AB_2340469 |
Guinea Pig polyclonal anti-INS |
Acris |
Cat# BP5022; RRID: ABJ004211 |
Mouse monoclonal anti-GCG |
Sigma-Aldrich |
Cat# G2654; RRID: AB_259852 |
Sheep anti-BSCL2 antibody |
Thermo-Fisher |
Cat# PA5–47922; RRID: AB_2606102 |
Monoclonal Rat anti-TSPAN8 |
Thermo-Fisher |
Cat# MA5–24179; RRID: AB_2609273 |
Monoclonal Anti-Cytokeratin, pan (Mixture) antibody produced in mouse |
Sigma-Aldrich |
Cat# C2562; RRID: AB_476839 |
Donkey anti-Rabbit Rhodamine Red-X |
Jackson Immuno Research |
Cat# 711–297–003; RRID: AB_2340615 |
Rabbit anti-Nkx6.1 |
Sigma-Aldrich |
Cat# HPA036774; RRID: AB_10673664 |
Donkey anti-Guinea pig Alexa 647 |
Jackson Immuno Research |
Cat# 706–606–148; RRID: AB_2340477 |
Biological Samples |
Human pancreas sections |
University of Iowa Pathology Core |
N/A |
Critical Commercial Assays |
Fluidigm C1 chip |
Fluidigm |
100–5760 |
SMARTer UltraOLow RNA Kit for the Fluidigm C1 |
Clontech |
634833 |
Nextera XT Library Prep Kit |
Illumina |
FC-131–1096 |
Mix-n-StainTM CF 488A |
Sigma-Aldrich |
MX488AS100 |
Mix-n-StainTM CF 555 |
Sigma-Aldrich |
MX555S100 |
Deposited Data |
Our human pancreatic scRNaseq raw and processed data |
GEO |
GEO: GSE116753
|
Reanalyzed human pancreatic dataset |
GEO |
GEO:GSE83139
|
Reanalyzed human pancreatic dataset |
GEO |
GEO: GSE81608
|
Reanalyzed human pancreatic dataset |
GEO |
GEO: GSE81076
|
Reanalyzed human pancreatic dataset |
GEO |
GEO: GSE85241
|
Reanalyzed human pancreatic dataset |
PMID:26691212 |
Dataset EV2 |
Reanalyzed human pancreatic dataset |
ArrayExpress |
ArrayExpress: E-MTAB-5061 |
Software and Algorithms |
PyMINEr |
This paper https://www.ScienceScott.com/pyminer
|
N/A |
FIJI version 1.51w |
https://fiji.sc/ |
N/A |
MetaMorph version 7.8.0.0 |
https://www.moleculardevices.com |
N/A |
Other |
Ambicon ArrayControl RNAs |
Life Technologies |
AM1780M |