Table 1. Descriptive analysis of SNP markers along the genome per chromosome.
| CHR |
Size CHR2 |
N SNPs/CHR3 |
% SNP/CHR4 |
N SNPs mono.5 |
% SNP
mono.6 |
MAF7 |
|---|---|---|---|---|---|---|
| 01 | - | 4076 | 7,06 | 365 | 8,95 | 0,2527 |
| SSC1 | 315,32 | 6624 | 11,47 | 748 | 11,29 | 0,2313 |
| SSC2 | 162,57 | 3321 | 5,75 | 259 | 7,80 | 0,2510 |
| SSC3 | 144,79 | 2841 | 4,92 | 243 | 8,55 | 0,2454 |
| SSC4 | 143,47 | 3541 | 6,13 | 456 | 12,88 | 0,2385 |
| SSC5 | 111,51 | 2360 | 4,09 | 266 | 11,27 | 0,2386 |
| SSC6 | 157,77 | 3215 | 5,57 | 256 | 7,96 | 0,2594 |
| SSC7 | 134,76 | 3297 | 5,71 | 314 | 9,52 | 0,2366 |
| SSC8 | 148,49 | 2795 | 4,84 | 253 | 9,05 | 0,2513 |
| SSC9 | 153,67 | 3228 | 5,59 | 227 | 7,03 | 0,2529 |
| SSC10 | 79,10 | 1752 | 3,03 | 128 | 7,31 | 0,2661 |
| SSC11 | 87,69 | 1862 | 3,22 | 151 | 8,11 | 0,2476 |
| SSC12 | 63,59 | 1560 | 2,70 | 104 | 6,67 | 0,2545 |
| SSC13 | 218,64 | 4072 | 7,05 | 367 | 9,01 | 0,2604 |
| SSC14 | 153,85 | 3860 | 6,68 | 329 | 8,52 | 0,2701 |
| SSC15 | 157,68 | 2950 | 5,11 | 334 | 11,32 | 0,2328 |
| SSC16 | 86,90 | 1869 | 3,24 | 159 | 8,51 | 0,2566 |
| SSC17 | 69,70 | 1693 | 2,93 | 138 | 8,15 | 0,2242 |
| SSC18 | 61,22 | 1341 | 2,32 | 103 | 7,68 | 0,2455 |
| SSCX | 144,29 | 1498 | 2,59 | 297 | 19,83 | 0,1898 |
| SSCY | 1,64 | 15 | 0,03 | 0 | 0 | 0 |
1 Chromosome 0 represents non-defined position
2 Chromosome size in the Megabase
3 Number of SNPs per chromosome
4 SNP percentage per chromosome
5 Number of monomorphic SNPs
6 Percentage of monomorphic SNPs
7 The average for the minor allelic frequency per chromosome.