Table 5. Univariate negative binomial results (p-value and FDR) for endoscopic recurrence: family-level analysis.

Only families with FDR corrected p-values <0.05 are included.

	Ileal CD		p-value	FDR
Increased in recurrence	Recurrence Mean ±std	No recurrence Mean ±std
Proteobacteria/Gammaproteobacteria/ Pasteurellales/Pasteurellaceae	0.0467 ±0.1581	0.0173 ±0.0664	1E-5	0.002
Proteobacteria/Alphaproteobacteria/ Rhodospirillales/ Acetobacteraceae	0.0005 ± 0.1583	0.0000 ±0.0001	5E-5	0.004
Firmicutes/Clostridia/Clostridiales/ Other	0.0354 ± 0.1405	0.0022 ± 0.0046	4E-4	0.016
Actinobacteria/Corynebacteriales/ Mycobacteriaceae	0.0001 ±0.0003	0.0000 ±0.0003	0.001	0.026
Decreased in recurrence
Proteobacteria/Alphaproteobacteria/ Rhizobiales/ Methylobacteriaceae	0.0092 ± 0.023	0.0137 ± 0.0505	1E-4	0.006
Proteobacteria/Betaproteobacteria/ Burkholderiales/ Comamonadaceae	0.0028 ± 0.0044	0.018 ± 0.0663	0.001	0.02
Proteobacteria/Gammaproteobacteria/ Pseudomonadales/Moraxellaceae	0.001 ± 0.002	0.0185 ± 0.0799	0.001	0.02
Proteobacteria/Betaproteobacteria/ Burkholderiales/ Alcaligenaceae	0.004 ±0.005	0.018 ± 0.02	0.001	0.02
Firmicutes/Erysipelotrichi/ Erysipelotrichales/Erysipelotrichaceae	0.0001 ± 0.0003	0.007 ± 0.030	0.002	0.03