Table 2.
Species | Strain | Growth Ratea | NCBI Accession | Experiment ID* |
---|---|---|---|---|
Bacteroides thetaiotaomicron | VPI-5482 | Slow | NC_004663 | SRX020805, SRX860738 |
Bacillus subtilis | 168 | Fast | NC_000964 | SRX515181, SRX2804667 |
Escherichia coli | K-12 | Fast | NC_000913 | SRX515174, SRX669653 |
Leptospira interrogans | Fiocruz L1-130 | Slow | AE016823 | SRX2448246, SRX405952 |
Mycobacterium tuberculosis | H37Rv | Slow | NC_000962 | SRX1372108, SRX4374910 |
Salmonella enterica | LT2 | Fast | NC_003197 | SRX1638989, SRX1258668 |
Synechocystis sp. | PCC 6803 | Slow | NC_017277 | SRX347145, SRX4145044 |
aInformation on species growth-rate are retrieved from Rocha24.
*All selected datasets have matching species strains between protein abundance, GtRNAdb, NCBI and RNA-Seq data, with the exception of L. interrogans (SRX2448246) due to the lack of a second RNA-Seq data in GEO Datasets for strain Fiocruz L1-130. All cultures in RNA-Seq experiments were isolated during log phase of growth. The first listed SRX dataset was selected for all analyses, and both were used for Table 1 and Fig. S4.