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. 2019 Feb 28;9:3184. doi: 10.1038/s41598-019-39369-x

Table 2.

The seven bacterial species studied herein due to their availability of protein abundance, growth rate and RNA-Seq data.

Species Strain Growth Ratea NCBI Accession Experiment ID*
Bacteroides thetaiotaomicron VPI-5482 Slow NC_004663 SRX020805, SRX860738
Bacillus subtilis 168 Fast NC_000964 SRX515181, SRX2804667
Escherichia coli K-12 Fast NC_000913 SRX515174, SRX669653
Leptospira interrogans Fiocruz L1-130 Slow AE016823 SRX2448246, SRX405952
Mycobacterium tuberculosis H37Rv Slow NC_000962 SRX1372108, SRX4374910
Salmonella enterica LT2 Fast NC_003197 SRX1638989, SRX1258668
Synechocystis sp. PCC 6803 Slow NC_017277 SRX347145, SRX4145044

aInformation on species growth-rate are retrieved from Rocha24.

*All selected datasets have matching species strains between protein abundance, GtRNAdb, NCBI and RNA-Seq data, with the exception of L. interrogans (SRX2448246) due to the lack of a second RNA-Seq data in GEO Datasets for strain Fiocruz L1-130. All cultures in RNA-Seq experiments were isolated during log phase of growth. The first listed SRX dataset was selected for all analyses, and both were used for Table 1 and Fig. S4.