Bacterial and Virus Strains |
|
E. coli NEB5α |
NEB |
Cat#C2987 |
E. coli BL21 (DE3) Gold |
Agilent |
Cat#230132 |
E. coli BW25113 |
Dr. Kirill A. Datsenko, Purdue University |
Datsenko and Wanner, 2000 |
E. coli BW25113 tldD-
|
Host lab |
Ghilarov et al., 2017 |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Gel Filtration HMW Calibration Kit |
GE Healthcare |
Cat#28403842 |
TEV protease |
Host lab stocks |
N/A |
TldD/E protease |
Host lab stocks |
Ghilarov et al., 2017 |
HisTrap FF |
GE Healthcare |
Cat#17531901 |
HiTrap Chelating HP |
GE Healthcare |
Cat#17040801 |
Superdex 200 Increase 10/300 |
GE Healthcare |
Cat#28990944 |
Superdex 200 Increase 5/150 |
GE Healthcare |
Cat#28990945 |
MBPTrap HP 1ml |
GE Healthcare |
Cat#29048641 |
|
Critical Commercial Assays |
|
Gel Extraction and DNA Cleanup Micro Kit |
Thermo Scientific |
Cat#K0832 |
GeneJET Plasmid Miniprep Kit |
Thermo Scientific |
Cat#K0503 |
Phusion High-Fidelity PCR Kit |
Thermo Scientific |
Cat#F553S |
|
Deposited Data |
|
BCD-pB17-ADP-P (McbBCD complexed with processed McbA, ADP and phosphate) |
RCSB PDB |
6GRG |
BCD-pB17 (McbBCD complexed with fully processed McbA) |
RCSB PDB |
6GOS |
BCD-pB17short (McbBCD complexed with fully processed McbA 1–46) |
RCSB PDB |
6GRH |
BCD-free (apo McbBCD) |
RCSB PDB |
6GRI |
|
Oligonucleotides |
|
Described in Table S2
|
|
N/A |
|
Recombinant DNA |
|
pBAD/His B |
Thermo (Invitrogen) |
V43001 |
pBAD Ec-McB |
Dr. Mikhail Metelev, Uppsala University |
Metelev et al., 2013 |
pBAD Ec-McB-His |
This work |
N/A |
pBAD Ec-McB-His 1-46 |
This work |
N/A |
pBAD mcbBCD and mutants used in the study |
This work |
N/A |
pET28-MBP mcbA |
Host lab |
Ghilarov et al., 2017 |
pET28-MBP mcbA mutants used in the study |
This work |
N/A |
|
Software and Algorithms |
|
XDS |
http://www.ccp4.ac.uk/ |
Kabsch, 2010 |
AIMLESS |
http://www.ccp4.ac.uk/ |
Evans and Murshudov, 2013 |
XIA2 |
http://www.ccp4.ac.uk/ |
Winter, 2010 |
BUCCANEER |
http://www.ccp4.ac.uk/ |
Cowtan, 2006 |
CRANK2 |
http://www.ccp4.ac.uk/ |
Skubák and Pannu, 2013 |
SHELX |
http://www.ccp4.ac.uk/ |
Sheldrick, 2008 |
REFMAC5 |
http://www.ccp4.ac.uk/ |
Murshudov et al., 1997 |
MOLPROBITY |
http://www.ccp4.ac.uk/ |
Davis et al., 2007 |
COOT |
http://www.ccp4.ac.uk/ |
Emsley and Cowtan, 2004 |
CCP4MG |
http://www.ccp4.ac.uk/ |
McNicholas et al., 2011 |
|
Other |
|
LithoLoops 0.02 mm |
Molecular Dimensions |
MD7-130 |
SeedBead Kit PTFE |
Hampton Research |
HR2-320 |
96 well MRC crystallization plates |
Molecular Dimensions |
MD11-00-100 |
Amicon concentrators 30 kDa cutoff |
Millipore |
UFC903024 |
C18 Zip-Tips |
Milllipore |
ZTC18S096 |