Table IV.
Sequence statistics for each sample.
| Case/time-point | Total reads (n) | Immune sequences (n) | In-frame sequences (n) | Out-of-frame sequences (n) | Total CDR3 sequences (n) | Unique CDR3 nt sequences (n) | Unique CDR3 AA sequences (n) |
|---|---|---|---|---|---|---|---|
| Case 1 | |||||||
| Pre1 | 435,064 | 431,037 | 340,034 | 90,817 | 285,020 | 39,406 | 32,744 |
| Post1 | 496,537 | 486,442 | 268,278 | 217,707 | 182,009 | 18,828 | 15,331 |
| Post7 | 403,593 | 398,636 | 220,842 | 177,542 | 150,370 | 23,895 | 20,310 |
| Case 2 | |||||||
| Pre1 | 572,795 | 480,031 | 404,703 | 75,068 | 352,553 | 51,913 | 43,978 |
| Post1 | 650,859 | 356,884 | 242,488 | 114,047 | 191,181 | 21,340 | 17,431 |
| Post7 | 588,477 | 323,629 | 253,726 | 69,720 | 209,382 | 29,920 | 25,090 |
| Case 3 | |||||||
| Pre1 | 922,607 | 313,193 | 240,813 | 72,173 | 202,578 | 26,384 | 21,771 |
| Post1 | 130,4368 | 393,937 | 300,335 | 93,207 | 257,911 | 28,326 | 22,837 |
| Post7 | 770,650 | 383,720 | 271,055 | 112,466 | 224,214 | 24,027 | 19,428 |
Pre1, 1 day prior to transplantation; post7, 7 days post transplantation; CDR3, complementarity-determining region 3; nt, nucleotide; AA, amino acid.