Table 1.
Cases | Phenotype | Sex | Agea | Breakpoint (approximate size) | Methylation status at SNRPN-DMRd | |
---|---|---|---|---|---|---|
Case 1 | PWS | Male | 2 mo | Chr15:25,150,978-25,225,535 (75 kb)b | Hypermethylated | |
Case 2 | Healthy carrier (father of case 1) | Male | 36 yr | Hypomethylated | ||
Case 3 | PWS | Female | 3 yr | Chr15:25,216,569-25,415,670 (200 kb)b | Normal | |
Case 4 | AS | Female | 3 yr | Chr15:25,126,774-25,168,037 (41 kb)b | Hypomethylated | |
Case 5 | AS | Male | 4 yr | Chr15:25,164,853-25,168,575 (3.7 kb)b | Hypomethylated | |
Case 6 | Healthy carrier (mother of case 5) | Female | 36 yr | Normal | ||
PWSLD | PWSLD-1 | PWS | Male | 0 mo | BP2–3 (5.5 Mb)c | Hypermethylated |
PWSLD-2 | PWS | Male | 2 mo | BP1–3 (6 Mb)c | Hypermethylated | |
PWSLD-3 | PWS | Male | 3 yr | BP1–3 (6 Mb)c | Hypermethylated | |
PWSLD-4 | PWS | Male | 8 yr | BP1–3 (6 Mb)c | Hypermethylated | |
ASLD | ASLD-1 | AS | Female | 9 yr | BP2–3 (5.5 Mb)c | Hypomethylated |
ASLD-2 | AS | Female | 9 yr | BP2–3 (5.5 Mb)c | Hypomethylated | |
ASLD-3 | AS | Male | 2 yr | BP1–3 (6 Mb)c | Hypomethylated | |
ASLD-4 | AS | Female | 1 yr | BP1–3 (6 Mb)c | Hypomethylated |
PWS Prader-Willi syndrome, AS Angelman syndrome, DMR differentially methylated region, LD large deletion, BP breakpoint
aAge at sample collection (mo months, yr years)
bThe breakpoints were estimated according to the results of aCGH
cThe breakpoints were estimated according to the results of methylation-specific multiplex ligation-dependent probe amplification (MS-MLPA). The locations of BPs are shown in Additional file 2: Figure S1
dMethylation status were examined by MS-MLPA