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. 2019 Feb 28;11:37. doi: 10.1186/s13148-019-0635-z

Table 4.

Differentially methylated regions in blood DNA in relation to PM10 exposure (adjusted P < 0.05 both in DMRcate and in comb-p)

Chra Gene (distance to geneb) DMRcate comb-p Minimum Pg
Start (bpc) End (bp) FDRd #CpGse Start (bp) End (bp) Sidak Pf #CpGs
1 MIB2 1549615 1550031 0.020 5 (4) 0.009 0.009
2 NOL10 (−22,166) 10687583 10688726 9.4E-05 8 (5) 10687962 10688317 2.6E-05 5 (5) 2.5E-04
2 SNED1 241975035 241976244 0.006 6 (5) 241975756 0.015 4 (4) 0.005
3 IL20RB 136676672 136676846 0.007 2 (2) 0.011 2.5E-04
6 TRIM27 28874479 28875370 9.4E-05 7 (6) 28874754 7.3E-04 4 (4) 0.002
6 TRIM39 30297174 30297627 2.3E-08 11 (10) 1.1E-07 8.4E-04
6 LTA 31539539 31540750 1.3E-11 19 (13) 31540461 3.4E-06 18 (12) 4.8E-05
6 TREM1 41254471 41254997 0.018 4 (3) 41254433 0.012 5 (3) 1.7E-04
7 FOXK1 4752951 4753002 1.3E-04 3 (3) 7.2E-04 3.4E-04
8 CSGALNACT1 19459672 19460243 0.003 7 (4) 0.001 7.8E-04
8 PIWIL2 22131675 22133356 1.2E-04 15 (6) 22132563 0.027 13 (5) 3.8E-05
8 KIF13B h 28961315 28961356 2.9E-04 3 (2) 0.003 1.4E-06
9 C9orf131 35042344 35042395 0.003 2 (2) 0.005 5.6E-05
10 CAMK1D 12648032 12648338 3.6E-02 3 (2) 12648526 0.011 4 (3) 0.002
10 C10orf105 73498624 73498766 0.003 3 (2) 0.032 2.7E-05
10 PTPRE 129794994 129795003 0.002 2 (2) 0.020 3.9E-05
15 FLJ42289 100890907 100891257 1.1E-04 5 (4) 100890963 0.014 4 (3) 8.8E-05
17 TNRC6C 76036514 76037562 7.3E-05 7 (7) 76037035 1.6E-05 6 (6) 0.001
17 CCDC57 80084554 80085082 1.3E-04 4 (4) 1.3E-05 4.3E-05
19 PRTN3 846117 846354 0.010 3 (3) 0.004 0.001
19 PRTN3 847943 848071 0.005 4 (4) 0.003 0.001
19 CALR 13053719 13054718 0.002 5 (4) 13054427 0.014 4 (3) 8.3E-05
19 FBXO17 39465821 39466757 0.002 8 (4) 0.004 6.6E-04
20 STK35 2085157 2085344 0.003 2 (2) 0.002 1.7E-05
20 SLPI 43882990 43883307 0.004 3 (3) 43883546 8.5E-04 4 (4) 9.7E-04
20 C20orf123 45179157 45179413 2.0E-04 6 (5) 1.4E-04 2.2E-04
21 C21orf81 15352848 15352983 0.013 2 (2) 0.012 4.7E-04

Blanked cells in “Start,” “End,” and “#CpGs” for comb-p represent the same information compared to results in DMRcate

aChromosome

bMinimum distance to transcription start site of the mapped gene (base pair)

cPhysical position (base pair, National Center for Biotechnology Information human reference genome assembly Build 37.3)

dBenjamini-Hochberg false discovery rate

eNumber of probes in the region (number of probes having uncorrected p value < 0.05)

fP of Sidak multiple-testing correction

gMinimum p value among uncorrected p-values of CpGs in each region. When either start or end positions were different between DMRs from the two DMR approaches, we used results from DMRcate

hRegion including significant (FDR < 0.05) differentially methylated probes from our epigenome-wide association study