Fig 1. The 3D reconstruction of MCMV icosahedral capsid.

(A) Radially colored surface representation of the 3D reconstruction of MCMV at ~5 Å resolution, viewed along a 3-fold axis. Only the icosahedral symmetric components, including the capsid and capsid-associated tegument complex (CATC), are visible because the pleomorphic envelope and tegument layer, as well as the unique portal complex, have been smeared due to averaging of tens of thousands of particles and imposition of icosahedral symmetry. The filled pentagon, triangle and oval mark a 5-fold, 3-fold, and 2-fold axis, respectively. (B) Zoom-in surface view of one facet of the icosahedral capsid with structural components colored as indicated. Density of triplex Tf region at the center is smeared due to imposition of 3-fold symmetry during icosahedral reconstruction. A slightly lower density threshold was used for the pentons and triplex Ta/Tf with their associated tegument protein pM32, such that their volumes are comparable to subunits elsewhere. (C-D) Schematic (C) and cryoEM density map (D) of one asymmetric unit (shaded) of the reconstruction with individual capsid protein subunits labeled, following the nomenclature used in HCMV [14]. Subunits of triplex Tf and its associated pM32 are shown in semi-transparency instead of solid colors as their orientations were not determined in the icosahedral reconstruction here, but inferred from sub-particle reconstruction after sub-particle 3D classification (see S3 Fig).