Table 1.
Analysis of repetitive elements in apomixis-linked BACs of P. simplex.
| Type of repeats | Repeat class/family | Query sequence (length) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Ps127F06_c1 (73,550) | Ps366H1_c1 (75,957) | Ps366H1_c5 (11,754) | PsH10 (75,005) | ||||||
| Retroelements | N | Length occupied (%) | N | Length occupied (%) | N | Length occupied (%) | N | Length occupied (%) | |
| LINE/L1 | 1 | 39 (0.05) | 2 | 1,471 (12.51) | 2 | 1,621 (2.16) | |||
| LTR/Gypsy | 9 | 4,355 (5.92) | 16 | 3,696 (4.87) | 6 | 1,260 (1.68) | |||
| LTR/Copia | 1 | 69 (0.09) | 4 | 5,381 (7.08) | 8 | 8,923 (11.90) | |||
| Transposons | |||||||||
| DNA/TcMar-Stowaway | 2 | 418 (0.55) | 2 | 433 (0.58) | |||||
| RC/Helitron | 4 | 2,736 (3.72) | 2 | 173 (0.23) | 1 | 143 (0.19) | |||
| DNA/MuLE-MuDR | 1 | 11 (0.01) | |||||||
| DNA/PIF-Harbinger | 2 | 554 (0.75) | 1 | 98 (0.83) | |||||
| DNA/hAT-Ac | 2 | 381 (0.52) | |||||||
| DNA/hAT-Tip100 | 2 | 1,580 (2.11) | |||||||
| DNA/PIF-Harbinger | 2 | 554 (0.75) | 1 | 932 (1.24) | |||||
| DNA/CMC-EnSpm | 1 | 166 (0.23) | 3 | 409 (0.55) | |||||
| Total interspersed repeats | 8,826 (12) | 9,707 (12.8) | 1,569 (13.35) | 15,301 (20.40) | |||||
| Simple repeats | 25 | 1,308 (1.78) | 19 | 852 (1.12) | 4 | 242 (2.06) | 12 | 851 (1.13) | |
| Low complexity | 1 | 39 (0.05) | 5 | 214 (0.28) | 1 | 60 (0.51) | 1 | 47 (0.06) | |