Table 2.
Expression analysis of the apomixis-linked genes of P. simplex and their P. notatum homologs.
| P. notatum Roche-454 transcriptome expression analysis | ||||||
| Isotig ID | 13832* | 20690 | 27671 | 10887 | 9764* | 9721 |
| Reads Apoa | 0.987 (1) | 9.873 (10) | 86.856 (88) | 8.883 (9) | 12.831 (13) | 67.116 (68) |
| Reads Sexa | 17.204 (17) | 2.024 (2) | 49.588 (49) | 1.012 (1) | 0 | 148.764 (147) |
| logFC | 3.894 | −2.287 | −0.879 | −3.054 | −6.732 | 1.075 |
| logConc | 3.974 | 3.522 | 6.663 | 3.329 | 3.611 | 3.611 |
| p-value | 1.46e−04 | 3.86e−02 | 6.06e−04 | 2.15e−02 | 2.45e−04 | 2.57e−07 |
| FDR | 5.57e−03 | 3.83e−01 | 1.80e−02 | 2.70e−01 | 8.49e−03 | 2.07e−05 |
| P. simplex (in RT-qPCR assays) | ||||||
| Gene ID | PsACR|F.3 | PsACR|H.13 | H10_950 | PsACR|F.14 | PsACR|H.5 | PsACR|H.7 |
| RUEb Apo | nd | 5.01 | nd | nd | 37.04 | 3.27 |
| RUEb Sex | nd | 0.16 | nd | nd | 0.13 | 8.18 |
| p-value | nd | 3.68e−05 | nd | nd | 1.81e−06 | 2.76e−02 |
| FDR | nd | 7.36e−05 | nd | nd | 7.25e−06 | 3.68e−02 |
aNormalized number of reads in apomictic (A) and sexual (Sex) 454/Roche libraries. In brackets are the non-normalized read count values; *Transcripts showing significant differences in abundance between apomictic and sexual libraries (logFC > |2| and FDR < 0.05); bRelative Units of Expression.