Table 2.

Additive × environment interaction QTLs (MET-QTLs) for grain protein content (GPC) and single grain protein content (SGPC).

MET-QTL	Chromo-some	Position (Mb)	Left Marker	Right Marker	Peak locus	SNP information	LOD	PVE	PVE (A)	PVE (AbyE)	Add	AbyE_01	AbyE_02	Heritability (h2)
Eq-SGPC1.1	1	0.861041	Affx-93237905	Affx-93229368	CSCWR_Os01g02590__61041	Non-synonymous SNP, resides in gene	4.604	6.553	6.475	0.077	−0.078	0.009	−0.009	0.988
Eq-SGPC1.2	1	1.504321	Affx-93256957	Affx-93252910	SCR200_Os01g03650_04321	Resides in gene, synonymous SNP	4.289	5.394	4.310	1.084	0.057	−0.028	0.028	0.799
Eq-SGPC2.1	2	5.665058	Affx-93260438	Affx-93236905	CSCWR_Os02g10740_65058	Resides in gene, synonymous SNP	4.416	3.811	3.762	0.049	0.052	0.006	−0.006	0.987
Eq-SGPC2.2	2	26.38269	Affx-93234385	Affx-93236297	CSCWR_Os02g43720_82691	Resides in gene, resides in intron	2.797	2.622	2.599	0.023	−0.097	0.009	−0.009	0.991
Eq-SGPC7.1	7	22.24752	Affx-93225742	Affx-93256949	SCR100_Os07g37440_17971	Resides in gene, resides in intron	6.836	7.510	7.320	0.190	0.078	−0.013	0.013	0.974
Eq-SGPC11.1	11	3.787716	Affx-93232878	Affx-93212320	SCR200_Os11g07480_87716	Non-synonymous SNP, resides in gene	4.298	4.159	4.159	0.000	0.073	0.000	0.000	1.000
Eq-GPC1.1	1	0.861041	Affx-93237905	Affx-93229368	CSCWR_Os01g02590__61041	non-synonymous SNP, resides in gene	6.923	8.988	8.885	0.103	−0.427	0.046	−0.046	0.988
Eq-GPC2.1	2	9.976316	Affx-93243043	Affx-93221488	SCR200_Os02g17350_76316	Resides in gene, synonymous SNP	3.371	4.055	3.551	0.505	0.261	−0.098	0.098	0.875
Eq-GPC3.1	3	35.27895	Affx-93211998	Affx-93250371	SCR200_Os03g62388_78948	Resides in gene, synonymous SNP	2.592	2.935	2.696	0.239	0.221	−0.066	0.066	0.918
Eq-GPC5.1	5	1.237304	Affx-93260300	Affx-93258158	SCR200_Os05g03150_37304	Resides in 3′ UTR, resides in gene	2.543	2.649	2.649	0.000	0.221	−0.001	0.001	1.000
Eq-GPC11.1	11	3.787716	Affx-93232878	Affx-93212320	SCR200_Os11g07480_87716	Non-synonymous SNP, resides in gene	2.955	3.361	3.222	0.139	0.328	−0.068	0.068	0.958