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. Author manuscript; available in PMC: 2019 Mar 2.
Published in final edited form as: Physiol Biochem Zool. 2016 Nov 23;90(1):1–14. doi: 10.1086/689775

Table 1.

Examples of definitions involving epigenetics, ignoring usage prior to Waddington, illustrating how they have changed across the years. All are direct quotations from the original sources (including quotation marks used there), with one exception as indicated. The various definitions also illustrate continuing variation, especially with respect to the breadth of the definition and also whether some degree of inheritance is necessarily implied. Epigenetic effects are one mechanism of early-life effects, the more general topic covered in this paper.

Author(s) Year Definition
Waddington 1939 One might say that the set of organizers and organizing relations to which a certain piece of tissue will be subject during development make up its “epigenetic constitution” or “epigenotype.”
Waddington 1942 the processes involved in the mechanism by which the genes of the genotype bring about phenotypic effects
Holliday 1987 concerned with the strategy of genes in unfolding the genetic program in development
Atchley and Hall 1991 we use the term ‘epigenetic factors’ for those factors that arise external to a developing cell and influence the cell’s DNA extrinsically
Riggs et al. 1996 The study of mitotically and/or meiotically heritable changes in gene function that cannot be explained by changes in DNA sequence
Wu and Morris 2001 the study of changes in gene function that are mitotically and/or meiotically heritable and that do not entail a change in DNA sequence
Jaenisch and Bird 2003 Many [alterations] in gene expression arise during development and are subsequently retained through mitosis. Stable alterations of this kind are said to be “epigenetic,” because they are heritable in the short term but do not involve mutations of the DNA itself.
Holliday 2006 the study of nuclear inheritance which is not based on changes in DNA sequence
Bird 2007 the structural adaptation of chromosomal regions so as to register, signal, or perpetuate altered activity states
Jablonka 2009 the study of the processes that underlie developmental plasticity and canalization and that bring about persistent developmental effects in both prokaryotes and eukaryotes
Jablonka and Raz 2009 Epigenetics is the study of the processes that underlie developmental plasticity and canalization and that bring about persistent developmental effects in both prokaryotes and eukaryotes.
Jablonka and Raz 2009 Epigenetic inheritance is a component of epigenetics. It occurs when phenotypic variations that do not stem from variations in DNA base sequences are transmitted to subsequent generations of cells or organisms.
Halfmann and Lindquist 2010 encompasses all mechanisms for the inheritance of biological traits that do not involve alterations of the coding sequence of DNA
Jablonka 2013 The molecular processes that underlie persistent developmental changes are known as epigenetic mechanisms.
Tammen et al. 2013 Epigenetics is the field of study surrounding stable alterations to the DNA and histone proteins that alter gene expression (Jaenisch and Bird, 2003).
Laland et al. 2014 Paraphrase: Emerging evolutionary synthesis includes epigenetics among other kinds of extra-genetic inheritance.
Waterland 2014 Epigenetics is the study of mitotically heritable alterations in gene expression potential that occur without alterations in DNA sequence (Jaenisch and Bird, 2003).
Pluess 2015 study of changes in organisms caused by modification of gene expression rather than alteration of the DNA