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. 2019 Feb 25;10:317. doi: 10.3389/fmicb.2019.00317

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Copyright © 2019 van Tonder, Bray, Jolley, Jansen van Rensburg, Quirk, Haraldsson, Maiden, Bentley, Haraldsson, Erlendsdóttir, Kristinsson and Brueggemann.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Phylogenetic tree representing the relationships among all 3,118 pneumococci, constructed based on the concatenated sequence alignment of 558 supercore genes. Clades were colored according to hierBAPS sequence cluster. Outer rings were annotated and colored as depicted in the legends. The serotypes and CCs represented by >10 and >20 genomes, respectively, were annotated here.