Table 3.
Large genomic regions that were unique to the Maela dataset.
| Representative genome | Length of region (bp) | No. of Maela genomes with region | GenBank best match (% identity) | Streptococcus spp. best match (% identity) | Fragment type |
|---|---|---|---|---|---|
| SMRU1398 | 66,142 | 7 | S. agalactiae ILRI112 (98.0) | S. dysgalactiae 66090 (96.4) | Tn1549 and Tn916 with tet(M) |
| SMRU1170 | 59,943 (1 gap) | 2 | Filofactor alocis ATCC35896 (99.0) | S. dysgalactiae 65857 (89.8) | Tn1549 and Tn916 with tet(M) |
| SMRU1457 | 51,873 | 11 | No significant match | S. dysgalactiae 65857 (97.4) | Tn1549 and Tn916 with tet(M) |
| SMRU2268 | 41,961 | 2 | S. anginosus C238 (93.0) | S. constellatus 63991 (90.7) | Tn1549 no Tn916 |
| SMRU1351 | 39520 | 11 | No significant match | No significant match | Prophage |
| SMRU2725 | 38,392 | 19 | No significant match | No significant match | Unknown transposon fragment |
| SMRU392 | 34256 | 1 | No significant match | No significant match | Prophage |
| SMRU158 | 32,902 (2 gaps) | 1 | Streptococcus sp. VT162 (94.0) | S. oralis 63998 (95.6) | Unknown transposon fragment |
| SMRU1017 | 32,098 | 1 | No significant match | No significant match | Partial prophage sequence |
| SMRU128 | 30,967 | 46 | S. pneumoniae 70585 (99.0) | S. suis 66662 (87.6) | Pentose and glucoronate interconversion region |
| SMRU148 | 30,628 | 1 | No significant match | S. oralis ATCC42996 (94.9) | TnGBS2 |
| SMRU1266 | 28998 | 1 | No significant match | No significant match | Partial prophage sequence |
| SMRU1770 | 26,625 (3 gaps) | 3 | Streptococcus sp. VT162 (85.0) | S. pseudopneumoniae 110329 (98.5) | Unknown transposon fragment |
| SMRU602 | 25,230 | 1 | Staphylococcus aureus 2395 USA500 (99.8) | S. dysgalactiae 66058 (99.0) | Tn916 with tet(M) |
The best overall significant matches are highlighted in bold.