Table 1.
Component networks from ten distinct data type in XooNet
| Code | Description | #links |
|---|---|---|
| XO-CX | Inferred co-functional network from co-expression in Xoo | 12,269 |
| XO-DP | Inferred co-functional network from similarity of domain profiles between two Xoo coding genes | 3,078 |
| XO-GN | Inferred co-functional network from gene neighborhood of Xoo orthologs across prokaryotic genomes | 18,487 |
| XO-PG | Inferred co-functional network from similarity of phylogenetic profiles between two Xoo genes | 36,244 |
| BA-HT | Associalogs transferred from high-throughput protein-protein interactions in five bacterial species | 5,522 |
| EC-CC | Associalogs transferred from co-citation of E. coli genes in Pubmed articles | 19,210 |
| EC-CX | Associalogs transferred from co-expression of E. coli genes | 20,283 |
| EC-LC | Associalogs transferred from literature-curated protein-protein interactions in E. coli | 828 |
| PA-CC | Associalogs transferred from co-citation of P. aeruginosa genes in Pubmed articles | 10,929 |
| PA-CX | Associalogs transferred from co-expression of P. aeruginosa genes | 6,808 |
| XooNet | An integrated co-functional network for Xoo | 106,000 |