Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2019 Feb 26;10:212. doi: 10.3389/fmicb.2019.00212

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

Copyright © 2019 Allemann, Kraemer, Korten, Ramsey, Casaulta, Wüthrich, Ramette, Endimiani, Latzin and Hilty.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

PMC Copyright notice

Comparison of the functional resistome with shotgun metagenomics sequencing for three samples. Functional resistome analyses revealed 18 genes for sample ID CF1 (2025.1–2025.18), 1 gene for CF2 (2026.1) and 5 genes for CF3 (2031.1-2031.5). The plots illustrate the sequence coverage from the shotgun sequencing for the genes identified by functional genomics. We recovered reads from shotgun metagenomics sequencing for 18/18 (for ID 2025), 0/1 (for ID 2026), and 5/5 (for ID 2031) resistance genes. Certain resistance genes (e.g., 2025.1, 2025.2, and 2025.3) were found in multiple samples [indicated as CF1 (ID 2025), CF2 (ID 2026) and CF3 (ID 2031)].