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. 2019 Mar 4;18(3):425–437. doi: 10.1007/s11557-018-01464-0

Table 2.

Details of the loci and primers used in the molecular study

Locus1 Primer Primer sequence (5′–3′) Orientation Amplicon size Reference
SSU-ITS-LSU V9G TTAAGTCCCTGCCCTTTGTA Forward de Hoog and Gerrits van den Ende (1998)
LR5 TCCTGAGGGAAACTTCG Reverse ca 1.6 kb Vilgalys and Hester (1990)
ITS42 TCCTCCGCTTATTGATATGC Reverse White et al. (1990)
LR32 CCGTGTTTCAAGACGGG Reverse Vilgalys and Hester (1990)
LR2R-A2 CAGAGACCGATAGCGCAC Forward Voglmayr et al. (2012)
cal CAL-228F GAGTTCAAGGAGGCCTTCTCCC Forward Carbone and Kohn (1999)
CAL-737R CATCTTTCTGGCCATCATGG Reverse 458 bp Carbone and Kohn (1999)
his CYLH3F AGGTCCACTGGTGGCAAG Forward (Crous et al. (2004)
H3-1b GCGGGCGAGCTGGATGTCCTT Reverse 438 bp Glass and Donaldson (1995)
ms204 MSE1F1n1 AAGGGNACYCTSGAGGGCCAC Forward Voglmayr and Mehrabi (2018)
MS-E5R2n CCASAGCATGGTGGTRCCRTC Reverse ca 1 kb Voglmayr and Mehrabi (2018)
rpb1 RPB1-Af GARTGYCCDGGDCAYTTYGG Forward Stiller and Hall (1997)
RPB1-6R1asc ATGACCCATCATRGAYTCCTTRTG Reverse ca 1.2 kb Hofstetter et al. (2007)
rpb2 fRPB2-5F GAYGAYMGWGATCAYTTYGG Forward Liu et al. (1999)
fRPB2-7cR GGGGWGAYCAGAAGAAGGC Reverse ca 1.2 kb Liu et al. (1999)
dRPB2-5f GAYACNGAYGAYCGWGAYCAYTTYGG Forward Voglmayr et al. (2016)
dRPB2-7r AANCCCATDGCYTGYTTDCCCAT Reverse ca 1.2 kb Voglmayr et al. (2016)
tef1 EF1-728F CATCGAGAAGTTCGAGAAGG Forward Carbone and Kohn (1999)
TEF1-LLErev AACTTGCAGGCAATGTGG Reverse ca 1.3 kb Jaklitsch et al. (2005)
TEF1_INTF2 CCGTGAYTTCATCAAGAACATG Forward Jaklitsch (2009)
TEFD_iR2 GTCTGGCCATCCTTGGAGAT Reverse Voglmayr et al. (2018)
tub2 T1 AACATGCGTGAGATTGTAAGT Forward O’Donnell and Cigelnik (1997)
BtHV2r CATCATRCGRTCNGGGAACTC Reverse ca 1 kb Voglmayr et al. (2017)
T1D CAANATGCGTGAGATTGTRAGT Forward This study
T22D CATCATRCGRTCNGGGAACTC Reverse ca 1.6 kb This study

1SSU-ITS-LSU, partial nuclear 18S rDNA, internal transcribed spacers and intervening 5.8S rDNA and 28S rDNA amplified and sequenced as a single fragment; cal, calmodulin; his, histone H3; ms204, guanine nucleotide-binding protein subunit beta; rpb1, DNA-directed RNA polymerase II largest subunit; rpb2, DNA-directed RNA polymerase II second largest subunit; tef1, translation elongation factor 1-alpha; tub2, β-tubulin

2Internal sequencing primers