Table 2.
Locus1 | Primer | Primer sequence (5′–3′) | Orientation | Amplicon size | Reference |
---|---|---|---|---|---|
SSU-ITS-LSU | V9G | TTAAGTCCCTGCCCTTTGTA | Forward | de Hoog and Gerrits van den Ende (1998) | |
LR5 | TCCTGAGGGAAACTTCG | Reverse | ca 1.6 kb | Vilgalys and Hester (1990) | |
ITS42 | TCCTCCGCTTATTGATATGC | Reverse | White et al. (1990) | ||
LR32 | CCGTGTTTCAAGACGGG | Reverse | Vilgalys and Hester (1990) | ||
LR2R-A2 | CAGAGACCGATAGCGCAC | Forward | Voglmayr et al. (2012) | ||
cal | CAL-228F | GAGTTCAAGGAGGCCTTCTCCC | Forward | Carbone and Kohn (1999) | |
CAL-737R | CATCTTTCTGGCCATCATGG | Reverse | 458 bp | Carbone and Kohn (1999) | |
his | CYLH3F | AGGTCCACTGGTGGCAAG | Forward | (Crous et al. (2004) | |
H3-1b | GCGGGCGAGCTGGATGTCCTT | Reverse | 438 bp | Glass and Donaldson (1995) | |
ms204 | MSE1F1n1 | AAGGGNACYCTSGAGGGCCAC | Forward | Voglmayr and Mehrabi (2018) | |
MS-E5R2n | CCASAGCATGGTGGTRCCRTC | Reverse | ca 1 kb | Voglmayr and Mehrabi (2018) | |
rpb1 | RPB1-Af | GARTGYCCDGGDCAYTTYGG | Forward | Stiller and Hall (1997) | |
RPB1-6R1asc | ATGACCCATCATRGAYTCCTTRTG | Reverse | ca 1.2 kb | Hofstetter et al. (2007) | |
rpb2 | fRPB2-5F | GAYGAYMGWGATCAYTTYGG | Forward | Liu et al. (1999) | |
fRPB2-7cR | GGGGWGAYCAGAAGAAGGC | Reverse | ca 1.2 kb | Liu et al. (1999) | |
dRPB2-5f | GAYACNGAYGAYCGWGAYCAYTTYGG | Forward | Voglmayr et al. (2016) | ||
dRPB2-7r | AANCCCATDGCYTGYTTDCCCAT | Reverse | ca 1.2 kb | Voglmayr et al. (2016) | |
tef1 | EF1-728F | CATCGAGAAGTTCGAGAAGG | Forward | Carbone and Kohn (1999) | |
TEF1-LLErev | AACTTGCAGGCAATGTGG | Reverse | ca 1.3 kb | Jaklitsch et al. (2005) | |
TEF1_INTF2 | CCGTGAYTTCATCAAGAACATG | Forward | Jaklitsch (2009) | ||
TEFD_iR2 | GTCTGGCCATCCTTGGAGAT | Reverse | Voglmayr et al. (2018) | ||
tub2 | T1 | AACATGCGTGAGATTGTAAGT | Forward | O’Donnell and Cigelnik (1997) | |
BtHV2r | CATCATRCGRTCNGGGAACTC | Reverse | ca 1 kb | Voglmayr et al. (2017) | |
T1D | CAANATGCGTGAGATTGTRAGT | Forward | This study | ||
T22D | CATCATRCGRTCNGGGAACTC | Reverse | ca 1.6 kb | This study |
1SSU-ITS-LSU, partial nuclear 18S rDNA, internal transcribed spacers and intervening 5.8S rDNA and 28S rDNA amplified and sequenced as a single fragment; cal, calmodulin; his, histone H3; ms204, guanine nucleotide-binding protein subunit beta; rpb1, DNA-directed RNA polymerase II largest subunit; rpb2, DNA-directed RNA polymerase II second largest subunit; tef1, translation elongation factor 1-alpha; tub2, β-tubulin
2Internal sequencing primers