Table 1.
Summary statistics based on the RNA-seq data
| Items | CK1 | CK2 | CK3 | ET1 | ET2 | ET3 | HCN1 | HCN2 | HCN3 |
|---|---|---|---|---|---|---|---|---|---|
| Total Reads Count (#) | 51,411,652 | 50,093,432 | 52,262,894 | 52,902,026 | 55,269,380 | 52,933,184 | 50,501,232 | 52,499,638 | 49,344,474 |
| Total Bases Count (kp) | 6,426,456.5 | 6,261,679 | 6,532,861.75 | 6,612,753.25 | 6,908,672.5 | 6,616,648 | 6,312,654 | 6,562,454.75 | 6,168,059.25 |
| Average Read Length (bp) | 125 | 125 | 125 | 125 | 125 | 125 | 125 | 125 | 125 |
| Good sequences (#) | 51,125,475 | 49,799,559 | 51,981,493 | 52,585,313 | 54,966,768 | 52,636,272 | 50,195,794 | 52,200,589 | 49,021,051 |
| Good ratio (%) | 99.44 | 99.41 | 99.46 | 99.4 | 99.45 | 99.44 | 99.4 | 99.43 | 99.34 |
| Q30 Bases Ratio (%) | 91.20 | 91.13 | 91.25 | 91.18 | 91.05 | 90.96 | 91.03 | 90.86 | 90.88 |
| Q20 Bases Ratio (%) | 95.72 | 95.67 | 95.76 | 95.70 | 95.65 | 95.60 | 95.62 | 95.55 | 95.53 |
| GC Bases Ratio (%) | 45.69 | 45.70 | 45.78 | 46.00 | 45.89 | 45.77 | 46.09 | 46.02 | 45.89 |
| Total mapped | 47,985,088 (94.31%) | 46,340,714 (93.52%) | 48,339,117 (93.42%) | 48,925,996 (93.53%) | 51,215,376 (93.62%) | 49,011,714 (93.57%) | 46,807,186 (93.74%) | 49,092,621 (94.50%) | 45,873,876 (94.11%) |
| Unique mapped | 47,004,223 (92.38%) | 45,813,306 (92.46%) | 47,788,558 (92.36%) | 48,310,664 (92.36%) | 50,594,553 (92.49%) | 48,390,954 (92.38%) | 46,222,496 (92.57%) | 48,488,187 (93.34%) | 45,300,714 (92.93%) |