TABLE 2.
Translation-related proteins and tRNAs in Loki’s Castle NCLDV
| Bin or virus | No. of paralogs of translation-related genesa
|
|||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AlaS | AsnS | GRS1 | GlnS | HisS | IleS | MetS | ProS | Pth2 | RLI1 | ThrS | TrpS | TyrS | eIF1 | eIF1a | eIF2a | eIF2b | eIF2g | eIF4e | eIF5b | eRF1 | tRNA | |
| LCPAC001 | 1 | 1 | 5 | |||||||||||||||||||
| LCPAC101 | 1 | 2 | ||||||||||||||||||||
| LCPAC102 | 3 | |||||||||||||||||||||
| LCPAC103 | ||||||||||||||||||||||
| LCPAC104 | 4 | |||||||||||||||||||||
| LCPAC201 | ||||||||||||||||||||||
| LCPAC202 | ||||||||||||||||||||||
| LCPAC302 | 1 | |||||||||||||||||||||
| LCPAC304 | 1 | 1 | 1 | 1 | 1 | 21 | ||||||||||||||||
| LCPAC401 | ||||||||||||||||||||||
| LCPAC403 | ||||||||||||||||||||||
| LCPAC404 | 1 | |||||||||||||||||||||
| LCPAC406 | ||||||||||||||||||||||
| LCDPAC01 | ||||||||||||||||||||||
| LCDPAC02 | ||||||||||||||||||||||
| LCMAC101 | 3 | 1 | 8 | |||||||||||||||||||
| LCMAC102 | 3 | |||||||||||||||||||||
| LCMAC103 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 17 | ||||||||||||||
| LCMAC201 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 11 | ||||||||||||||
| LCMAC202 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 26 | |||||||||||
| LCIVAC01 | ||||||||||||||||||||||
| LCMiAC01 | 1 | 1 | 1 | 1 | 1 | 1 | 18 | |||||||||||||||
| LCMiAC02 | 2 | 1 | 2 | |||||||||||||||||||
| Pithovirus sibericum | ||||||||||||||||||||||
| Cedratvirus_A11 | ||||||||||||||||||||||
| Orpheovirus | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |||||||||||||||
| Marseillevirus | 1 | 1 | 1 | |||||||||||||||||||
| Klosneuvirus_KNV1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 25 | |
| Mimivirus | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 6 | ||||||||||||||
| Tupanvirus | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 2 | 1 | ||||
| C. roenbergensis virus | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 1 | 16 | |||||||||||||
Translation-related proteins are abbreviated as follows: AlaS, alanyl-tRNA synthetase; AsnS, aspartyl/asparaginyl-tRNA synthetase; GlnS, glutamyl-tRNA or glutaminyl-tRNA synthetase; GRS1, glycyl-tRNA synthetase (class II); HisS, histidyl-tRNA synthetase; IleS, isoleucyl-tRNA synthetase; MetS, methionyl-tRNA synthetase; ProS, prolyl-tRNA synthetase; ThrS, threonyl-tRNA synthetase; TrpS, tryptophanyl-tRNA synthetase; TyrS, tyrosyl-tRNA synthetase; Pth2, peptidyl-tRNA hydrolase; eIF1, translation eukaryotic initiation factor 1 (eIF-1/SUI1); eIF1a, translation eukaryotic initiation factor 1A/IF-1; eIF2a, translation eukaryotic initiation factor 2, alpha subunit (eIF-2alpha); eIF2b, translation eukaryotic initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain; eIF2g, translation eukaryotic initiation factor 2, gamma subunit (eIF-2gamma; GTPase); eIF4e, translation eukaryotic initiation factor 4E (eIF-4E); eIF5b, translation eukaryotic initiation factor 2/eukaryotic initiation factor 5B (eIF5B) family (IF2/eIF5B); eRF1, peptide chain release factor 1 (eRF1); RLI1, translation initiation factor RLI1. Data for completely sequenced representatives of the relevant NCLDV families are included for comparison.