Table 3.
Identified haplotypes carrying putatively recessive lethal or semi-lethal alleles
| Haplotype name | Testa | Chrb | Haplotype region | Sliding window | Start base | End base | Haplotype percentage |
|---|---|---|---|---|---|---|---|
| AA14H1 | T4 | 14 | AA14R1 | 4 | 6,819,966 | 7,514,610 | 25.2 |
| AA14H2 | T4 | 14 | AA14R2 | 9 | 7,646,485 | 8,425,401 | 15.3 |
| AA14H3 | T4 | 14 | AA14R3 | 20 | 8,064,004 | 8,927,881 | 15.2 |
| AA14H4 | T3 | 14 | AA14R3 | 9 | 8,454,690 | 9,215,622 | 15.3 |
| AA18H5 | T4 | 18 | AA14R4 | 4 | 49,446,631 | 50,616,688 | 18.9 |
| AA19H6 | T4 | 19 | AA14R5 | 8 | 48,850,043 | 48,874,999 | 23.9 |
| CH13H1 | T4 | 13 | CH13R1 | 19 | 61,565,261 | 61,584,644 | 33.5 |
| CH19H2 | T4 | 19 | CH19R2 | 5 | 48,874,999 | 48,902,319 | 14.4 |
| CH19H3 | T3 | 19 | CH19R2 | 12 | 48,889,025 | 48,914,435 | 1.2 |
| HE6H1 | T4 | 6 | HE6R1 | 8 | 58,473,731 | 59,706,074 | 30.2 |
| HE6H2 | T4 | 6 | HE6R2 | 4 | 59,688,857 | 60,919,136 | 28.8 |
| HE19H3 | T2, T4 | 19 | HE19R3 | 13 | 48,854,119 | 48,900,428 | 28.9 |
| LI19H1 | T5 | 19 | LI19R1 | 20 | 48,851,566 | 48,871,260 | 12.7 |
| LI19H2 | T2 | 19 | LI19R1 | 11 | 48,883,348 | 48,906,682 | 11.1 |
| LI23H3 | T4 | 23 | LI23R2 | 20 | 27,923,154 | 28,649,349 | 13.7 |
| LI23H4 | T4 | 23 | LI23R3 | 12 | 28,307,706 | 29,872,481 | 11.5 |
| SI13H1 | T2 | 13 | SI13R1, SI13R2 | 15 | 73,746,516 | 74,973,171 | 9.5 |
| SI13H2 | T4 | 13 | SI13R1, SI13R2, SI13R3 | 19 | 73,895,443 | 75,240,419 | 22.3 |
| SI13H3 | T2 | 13 | SI13R2, SI13R3 | 1 | 74,109,992 | 75,310,875 | 9.3 |
| SI16H4 | T2 | 16 | SI16R4, SI16R5 | 16 | 51,195,450 | 53,097,936 | 10.8 |
| SI16H5 | T1 | 16 | SI16R4, SI16R5 | 4 | 51,811,400 | 53,434,159 | 8.8 |
| SI19H6 | T2, T4 | 19 | SI19R6 | 18 | 48,873,060 | 48,891,361 | 18.4 |
aT1: population test; T2: carrier mating test on sire × dam matings; T3: carrier mating test on sire × maternal grand-sire matings; T4: semi-lethality test on sire × dam matings; T5: semi-lethality test on sire × maternal grand-sire matings
bChr: chromosome number