Table 4.
ROH islands, shared by more than 50% (ROH freq.) of the Lipizzan horses from the Austrian stud farm Piber and the annotated genes in corresponding regions
| Chr. | Begin | End | Length (kb) | ROH freq. | Known genes |
|---|---|---|---|---|---|
| 3 | 118,669.793 | 118,769.903 | 100.1 | 0.508 | UVSSA, MAEA |
| 3 | 118,809.979 | 118,893.880 | 83.9 | 0.506 | CTBP1 |
| 5 | 48,702.703 | 49,211.103 | 508.4 | 0.530 | CHD1L, FMO5, PRKAB2 |
| 7 | 50,434.281 | 50,606.416 | 172.1 | 0.507 | – |
| 7 | 50,636.963 | 50,733.100 | 96.1 | 0.508 | – |
| 8 | 93,409.518 | 93,605.837 | 196.3 | 0.538 | CTDP1 |
| 11 | 24,134.125 | 24,816.254 | 682.1 | 0.611 | COPZ2, CBX1,SNX11, HOXB1, HOXB2, HOXB3, HOXB5, HOXB6, HOXB7, HOXB8, HOXB13, TTLL6 |
| 11 | 30,607.721 | 30,687.266 | 79.6 | 0.526 | – |
| 11 | 31,015.821 | 31,942.748 | 926.9 | 0.728 | C11H17orf67, DGKE, COIL, SCPEP1, AKAP1, MSI2 |
| 14 | 41,779.891 | 42,365.786 | 585.9 | 0.546 | FSTL4 |
| 16 | 37,870.208 | 38,823.469 | 953.3 | 0.542 | C16H3orf84, KLHDC8B, CCDC71, LAMB2, USP19, QARS, QRICH1, IMPDH2, NDUFAF3, DALRD3, ARIH2, WDR6, P4HTM, IP6K2, NCKIPSD, CELSR3, TMEM89, UQCRC1, SLC26A6, UCN2, PFKFB4, SHISA5, TREX1, ATRIP, CCDC51, PLXNB1, NME6, ECATH-3, ECATH-2 |
| 16 | 39,675.098 | 39,695.300 | 20.2 | 0.507 | – |
| 16 | 39,890.148 | 39,920.855 | 30.7 | 0.507 | CCDC12 |
| 16 | 40,077.806 | 40,159.633 | 81.8 | 0.514 | TMIE, ALS2CL |
| 18 | 635.232 | 1235.687 | 600.5 | 0.528 | ARHGEF4, PLEKHB2 |
| 20 | 43,065.487 | 43,166.223 | 100.8 | 0.507 | CAPN11, SLC29A1, HSP90AB1, SLC35B2, NFKBIE, TCTE1 |