Table 2.
Collagen Genes with Relatively High Expression in Skin
Average Normalized RPKMa |
Fold Difference | |||
---|---|---|---|---|
Humans | NH Great Apesb | |||
(a) Genes encoding proteins that form collagens in the epidermal BM zone | ||||
COL4A1 | Collagen type IV alpha 1 chain | 54.6 | 21.5 | 2.5 |
COL4A2 | Collagen type IV alpha 2 chain | 77.5 | 32.9 | 2.4 |
COL7A1 | Collagen type VII alpha 1 chain | 32.9 | 16.8 | 2.0 |
COL17A1 | Collagen type XVII alpha 1 chain | 181.7 | 76.4 | 2.4* |
COL18A1 | Collagen type XVIII alpha 1 chain | 41.7 | 18.3 | 2.3*** |
(b) Genes encoding proteins that form BGN-binding collagens | ||||
COL1A1 | Collagen type I alpha 1 chain | 444.4 | 198.5 | 2.2 |
COL1A2 | Collagen type I alpha 2 chain | 311.3 | 134.9 | 2.3 |
COL3A1 | Collagen type III alpha 1 chain | 404.7 | 148.9 | 2.7 |
COL6A1 | Collagen type VI alpha 1 chain | 276.3 | 106.2 | 2.6 |
COL6A2 | Collagen type VI alpha 2 chain | 459.3 | 185.1 | 2.5** |
COL6A3 | Collagen type VI alpha 3 chain | 45.6 | 27.3 | 1.7 |
In mapping to the human reference genome.
NH great apes: nonhuman great apes.
P < 0.05,
P < 0.01, and
P < 0.001, t-test with Bonferroni correction.