Table 2.
MF ontology terms enriched in non-embryogenic callus (NEC), numbers of transcripts annotated to the terms detected in NEC and isogenic embryonal mass (EM), GOid and GO code for each term obtained by BLAST2GO and P-values obtained by topGO (R package).
| GO id | EM | NEC | P-value | GO terms |
|---|---|---|---|---|
| GO:0005506 | 26 | 131 | 3 10-19 | Iron ion binding |
| GO:0016705 | 13 | 117 | 5 10-18 | Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| GO:0016887 | 50 | 109 | 4 10-5 | ATPase activity |
| GO:0043531 | 16 | 94 | 8 10-32 | ADP binding |
| GO:0050662 | 22 | 86 | 3 10-12 | Coenzyme binding |
| GO:0016616 | 24 | 79 | 1 10-9 | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| GO:0003854 | 16 | 66 | 2 10-22 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity |
| GO:0046983 | 19 | 51 | 1 10-3 | Protein dimerization activity |
| GO:0005215 | 13 | 49 | 5 10-5 | Transporter activity |
| GO:0043565 | 17 | 41 | 9 10-5 | Sequence-specific DNA binding |
| GO:0016773 | 19 | 41 | 2 10-53 | Phosphotransferase activity, alcohol group as acceptor |
| GO:0008289 | 9 | 33 | 1 10-8 | Lipid binding |
| GO:0022857 | 15 | 30 | 3 10-3 | Transmembrane transporter activity |
| GO:0008236 | 4 | 28 | 9 10-16 | Serine-type peptidase activity |
| GO:0016829 | 12 | 27 | 2 10-3 | Lyase activity |
| GO:0019001 | 3 | 21 | 1 10-5 | Guanyl nucleotide binding |
| GO:0016614 | 2 | 18 | 1 10-9 | Oxidoreductase activity, acting on CH-OH group of donors |
| GO:0008233 | 6 | 17 | 6 10-8 | Peptidase activity |
| GO:0016798 | 2 | 13 | 9 10-6 | Hydrolase activity, acting on glycosyl bonds |