Table 1.
The hmqABCDEFG operon distribution in Burkholderia cepacia complex.
| Species | Bcc strains included in Burkholderia Genome DB [Complete genomes] | Analysis of the hmqABCDEFG operon's distribution by sequence | ||
|---|---|---|---|---|
| Orthology analysis (DIAMOND) | Alignment analysis (BLASTN) | |||
| Burkholderia cepacia complex (Bcc) | Burkholderia cepacia (genomovar I) | 337 [24] | 42 | 77 |
| Burkholderia multivorans (genomovar II) | 56 [7] | – | – | |
| Burkholderia cenocepacia (genomovar III) | 243 [15] | – | – | |
| Burkholderia stabilis (genomovar IV) | – | – | – | |
| Burkholderia vietnamiensis (genomovar V) | 41 [6] | – | – | |
| Burkholderia dolosa (genomovar VI) | 2 [1] | – | – | |
| Burkholderia ambifaria (genomovar VII) | 6 [2] | 2 | 3 | |
| Burkholderia anthina (genomovar VIII) | 8 [–] | – | – | |
| Burkholderia pyrrocinia (genomovar IX) | 4 [1] | 1 | 3 | |
| Burkholderia ubonensis (genomovar X) | 292 [6] | 75 | 283 | |
| Burkholderia latens (BCC1) | 2 [1] | – | – | |
| Burkholderia diffusa (BCC2) | 12 [1] | – | – | |
| Burkholderia arboris (BCC3) | – | – | – | |
| Burkholderia seminalis (BCC7) | 3 [1] | – | – | |
| Burkholderia metallica (BCC8) | 1 [1] | – | – | |
| Burkholderia lata (group K) | 4 [2] | – | 2 | |
| Burkholderia contaminans (group K, BCCAT) | 7 [1] | 2 | 3 | |
| Burkholderia pseudomultivorans | 9 [1] | – | – | |
| Burkholderia stagnalis (BCC B) | 64 [1] | 32 | 63 | |
| Burkholderia territorii (BCC L) | 33 [1] | – | 2 | |
| Burkholderia paludis | – | |||
| Burkholderia sp. | 59 [18] | 2 | 11 | |
| Total of Bcc strains | 1257 [91] | 166 | 447 | |
| B. pseudomallei | 677 [75] | 27 | 655 | |
| B. thailandensis | 28 [15] | 13 | 22 | |
| Total of pseudomallei group strains | 705 [90] | 284 | 677 | |
| Total of strains | 1962 [181] | 450 | 1123 | |
The distribution of the hmqABCDEFG operon have been determined by using the orthology analysis available on Burkholderia genome DB and BLAST from B. ambifaria AMMD nucleic acid sequence. Both methods have been used individual gene and only the strains having the all seven genes in their genome have been kept. For the BLAST analysis, only genes having a high identity with the reference have been kept. The sign “–” means that no sequences were available.