Table 2.
Major genomic features of two isolates from Lake Água Preta and resistance genes annotated by CARD and/or ResFinder.
| E. coli APC43A | %GC | CDS | contigs | N50 | RIs | PAIs | Size (bp) | MLST | Serotype | Plasmids |
|---|---|---|---|---|---|---|---|---|---|---|
| 50.5 | 5923 | 195 | 3283348 | 5 | 25 | 5,035,455 | ST471 | O154:H18 | IncX4 e IncFIA | |
| Resistance Genes | ARO category | Genes | Contig localization | |||||||
| Antibiotic inactivation enzyme; beta-lactam resistance proteins | blaCTX–M–15 | 22_18911 | ||||||||
| intrinsic blaAmpC | ||||||||||
| Efflux pump conferring antibiotic resistance | acrE | 15_8461 | ||||||||
| emrB | 10_26638 | |||||||||
| mdtB | 5_4183 | |||||||||
| mdtL | 8_54031 | |||||||||
| msbA | 11_125192 | |||||||||
| tolC | 7_57761 | |||||||||
| Efflux pump conferring antibiotic resistance; antibiotic resistance gene cluster, cassette, or operon | mdtE | 37_5848 | ||||||||
| Efflux pump conferring antibiotic resistance; gene modulating antibiotic efflux | acrS | 15_10016 | ||||||||
| cpxR | 19_63902 | |||||||||
| emrR | 10_24793 | |||||||||
| H-NS | 20_22613 | |||||||||
| A. baumanii APC25 | %GC | CDS | contigs | N50 | RIs | PAIs | Size (bp) | MLST | Serotype | Plasmids |
| 39.0 | 5063 | 121 | 244684 | 10 | 11 | 4,860,843 | –a | –a | –b | |
| Resistance Genes | ARO category | Genes | Contig localization | |||||||
| Efflux pump complex or subunit conferring antibiotic resistance | adeK | 11_73107 | ||||||||
| Antibiotic inactivation enzyme; beta-lactam resistance protein | blaOXA–208 | 23_160179 | ||||||||
| blaADC–like | 6_85724 | |||||||||
apMLST and SeroTypeFinder do not have support for this taxon. bPlasmidFinder did not detected any plasmid sequence.