Table 3.
Statistics of feature encoding schemes used in the aforementioned succinylation site prediction tools.
| Encoding Types | Genetic Explanation | References |
|---|---|---|
| AAindex | Based on the AAindex indices database, the encoding scheme of AAindex reveals the biochemical properties of the sequences. | [56,59,62] |
| ACF | The auto correlation function features for surrounding succinylation sequences. | [54] |
| EBGW | Coding based on grouped weight of physicochemical properties of sequences surrounding succinylation sites. | [54] |
| VDWV | Van der Waals volume properties of surrounding succinylation sequences. | [54] |
| WAAC | Position weight amino acid composition of surrounding succinylation sequences. | [54] |
| AAC | The amino acid composition characterizes the specific state of the surrounding succinylation sequences. | [65] |
| CKSAAP | The CKSAAP encoding represents the short sequence motif information in surrounding succinylation sites. | [56,59] |
| PseAAC | The pseudo amino acid composition reflects a vectorized sequence-coupling model of surrounding succinylation sites. | [56,61,70] |
| SF | The predicted structural feature reflects the structural properties of protein in surrounding succinylation sites. | [66] |
| Binary | The position-specific information measured by binary profile for the curated sequences. | [59,62,65] |
| PSSM | The PSSM exposes the evolutionary information from the sequences. | [57] |
| pCKSAAP | The pCKSAAP reflects the sequence patterns and evolutionary information from the query sequences. | [62,65] |
Data of Table 1 is used.